View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15576_low_4 (Length: 316)

Name: NF15576_low_4
Description: NF15576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15576_low_4
NF15576_low_4
[»] chr4 (12 HSPs)
chr4 (17-253)||(8417440-8417672)
chr4 (178-300)||(8411980-8412102)
chr4 (35-149)||(8040675-8040789)
chr4 (178-252)||(8035161-8035235)
chr4 (17-143)||(8035255-8035377)
chr4 (178-239)||(8040600-8040661)
chr4 (35-137)||(9137994-9138096)
chr4 (177-240)||(9137912-9137975)
chr4 (183-246)||(46191022-46191085)
chr4 (193-246)||(8405056-8405109)
chr4 (72-126)||(8355459-8355513)
chr4 (193-246)||(43142215-43142268)
[»] chr2 (2 HSPs)
chr2 (178-229)||(33085141-33085192)
chr2 (17-94)||(33085010-33085083)
[»] chr7 (1 HSPs)
chr7 (183-246)||(5477606-5477669)


Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 8417440 - 8417672
Alignment:
Q  17 aaaatatccatttaatatataatgtctgctattcatttgaattgtgcaggaattccgcttaaatcccatttcgaagaaagcacaacctccacgctttgtt 116  Q
    |||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8417440 aaaatatccatttaata----atgtctgctattcatttgaattgtgcaggaattccgcttaaatcccatttcgaagaaagcgcaacctccacgctttgtt 8417535  T
Q  117 agattggagttgttgatagtgtacaagcattttacagatgaagaagaaacacttgcttcaaaacaagaaataatggaagtagtgaaacacttgcttcaaa 216  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8417536 agattggagttgtttatagtgtacaagcattttacagatgaagaagaaacacttgcttcaaaacaagaaataatggaagtagtggaacacttgcttcaaa 8417635  T
Q  217 acactacttcaatgcctagagttgatatcatataaca 253  Q
    |||| ||||||||||||||||||||||||||||||||    
T  8417636 acacgacttcaatgcctagagttgatatcatataaca 8417672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 178 - 300
Target Start/End: Original strand, 8411980 - 8412102
Alignment:
Q  178 aacaagaaataatggaagtagtgaaacacttgcttcaaaacactacttcaatgcctagagttgatatcatataacaaatctttagaggactccaatttgg 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8411980 aacaagaaataatggaagtagtgaaacacttgcttcaaaacactacttcaatgcctagagttgatatcatataacatatctttagaggactccaatttgg 8412079  T
Q  278 ttgaataaattatagatcttaag 300  Q
    |||||||||||||||||||||||    
T  8412080 ttgaataaattatagatcttaag 8412102  T

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Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 35 - 149
Target Start/End: Complemental strand, 8040789 - 8040675
Alignment:
Q  35 ataatgtctgctattcatttgaattgtgcaggaattccgcttaaatcccatttcgaagaaagcacaacctccacgctttgttagattggagttgttgata 134  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||| |||    
T  8040789 ataatgtctcctattcattcgaattgtgcaggaattccgcttaaatccaatttcgaagaaagcgcaacctccacgctttgctagattggagttgtttata 8040690  T
Q  135 gtgtacaagcatttt 149  Q
    ||| |||||| ||||    
T  8040689 gtgcacaagcctttt 8040675  T

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Target: chr4; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 178 - 252
Target Start/End: Complemental strand, 8035235 - 8035161
Alignment:
Q  178 aacaagaaataatggaagtagtgaaacacttgcttcaaaacactacttcaatgcctagagttgatatcatataac 252  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8035235 aacaagaaataatggaagtagtggaacacttgcttcaaaacactactttaatgcctagagttgatatcatataac 8035161  T

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Target: chr4; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 8035377 - 8035255
Alignment:
Q  17 aaaatatccatttaatatataatgtctgctattcatttgaattgtgcaggaattccgcttaaatcccatttcgaagaaagcacaacctccacgctttgtt 116  Q
    |||||||||||||||||    |||||| ||||||||| |||||||||||| ||||| ||||||||| | |||||||||    ||||||||||||||||||    
T  8035377 aaaatatccatttaata----atgtctcctattcattcgaattgtgcaggtattcctcttaaatccaacttcgaagaatttgcaacctccacgctttgtt 8035282  T
Q  117 agattggagttgttgatagtgtacaag 143  Q
    |||||||||||||| |||||| |||||    
T  8035281 agattggagttgtttatagtgcacaag 8035255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 178 - 239
Target Start/End: Complemental strand, 8040661 - 8040600
Alignment:
Q  178 aacaagaaataatggaagtagtgaaacacttgcttcaaaacactacttcaatgcctagagtt 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8040661 aacaagaaataatggaagtagtgaaacacttgcttcaaaacactacttcagtgcctagagtt 8040600  T

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Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 35 - 137
Target Start/End: Complemental strand, 9138096 - 9137994
Alignment:
Q  35 ataatgtctgctattcatttgaattgtgcaggaattccgcttaaatcccatttcgaagaaagcacaacctccacgctttgttagattggagttgttgata 134  Q
    |||||||||  |||||||| ||  | |||||||||||| |||||||||||||||||||||||  ||||||||||||||||||| |||||||||| | |||    
T  9138096 ataatgtctcttattcattcgaggtttgcaggaattcctcttaaatcccatttcgaagaaagtgcaacctccacgctttgttaaattggagttgcttata 9137997  T
Q  135 gtg 137  Q
    |||    
T  9137996 gtg 9137994  T

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Target: chr4; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 9137975 - 9137912
Alignment:
Q  177 aaacaagaaataatggaagtagtgaaacacttgcttcaaaacactacttcaatgcctagagttg 240  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||    
T  9137975 aaacaagaaataatggaaatagtggaacacttgcttcaaaacactacttcaatgactagagttg 9137912  T

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Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 46191085 - 46191022
Alignment:
Q  183 gaaataatggaagtagtgaaacacttgcttcaaaacactacttcaatgcctagagttgatatca 246  Q
    |||||||||||||||||| |||| |||||||||||||||| ||||||||||| |||||| ||||    
T  46191085 gaaataatggaagtagtggaacaattgcttcaaaacactatttcaatgcctaaagttgaaatca 46191022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 8405056 - 8405109
Alignment:
Q  193 aagtagtgaaacacttgcttcaaaacactacttcaatgcctagagttgatatca 246  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||| ||||||    
T  8405056 aagtagtggaacacttgcttcaaaacactactccaatgcctagagttaatatca 8405109  T

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Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 126
Target Start/End: Complemental strand, 8355513 - 8355459
Alignment:
Q  72 cgcttaaatcccatttcgaagaaagcacaacctccacgctttgttagattggagt 126  Q
    |||| |||||||||||| |||||||| ||||||||| ||||||||| ||||||||    
T  8355513 cgctcaaatcccatttcaaagaaagctcaacctccatgctttgttaaattggagt 8355459  T

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Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 43142268 - 43142215
Alignment:
Q  193 aagtagtgaaacacttgcttcaaaacactacttcaatgcctagagttgatatca 246  Q
    |||||||| |||| | |||||||||||||||| ||||||||| |||||||||||    
T  43142268 aagtagtgcaacaatcgcttcaaaacactactccaatgcctaaagttgatatca 43142215  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 33085141 - 33085192
Alignment:
Q  178 aacaagaaataatggaagtagtgaaacacttgcttcaaaacactacttcaat 229  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33085141 aacaagaaataatggaagcagtgaaacacttgcttcaaaacactacttcaat 33085192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 33085010 - 33085083
Alignment:
Q  17 aaaatatccatttaatatataatgtctgctattcatttgaattgtgcaggaattccgcttaaatcccatttcgaagaa 94  Q
    |||||||||||||||||    ||||||  |||||||| |||||||||||||||||| ||||||||| | |||||||||    
T  33085010 aaaatatccatttaata----atgtctcttattcattcgaattgtgcaggaattcctcttaaatccaacttcgaagaa 33085083  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 5477606 - 5477669
Alignment:
Q  183 gaaataatggaagtagtgaaacacttgcttcaaaacactacttcaatgcctagagttgatatca 246  Q
    |||||||| ||| | ||| ||||||||||||||||||||||| |||||||||||||| ||||||    
T  5477606 gaaataatcgaaattgtggaacacttgcttcaaaacactactccaatgcctagagttaatatca 5477669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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