View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15576_low_8 (Length: 249)
Name: NF15576_low_8
Description: NF15576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15576_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 56 - 241
Target Start/End: Complemental strand, 5655192 - 5655008
Alignment:
| Q |
56 |
aaaattttctgttactaaaagtcatgtcttttgtagtggggttggggaatcaacagttagaaaaaattgaaataaggggaccaaaaaactgaattttgaa |
155 |
Q |
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| T |
5655192 |
aaaattttctgttactaaaagtcaagtcttttgtagtggggttggggaatcaatagttagaaaaa-ttgaaataaggggaccaaaaaactgaatttttaa |
5655094 |
T |
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| Q |
156 |
ataggggtaccaaacttcagaaaaatgaaaataggggcaaccaaagtgcatttaggccaaatataaaattgttgcctttgctactc |
241 |
Q |
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| T |
5655093 |
ataagggtaccaaacttcagaaaaatgaaaatagggggaaccaaagtgcatttaggccaaatataaaattgttgcctttggtactc |
5655008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 5655378 - 5655343
Alignment:
| Q |
22 |
gatccgtagtgatagagctgaatcagaacttacgaa |
57 |
Q |
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| T |
5655378 |
gatccgtagtgatagagctgaatcagaacttacgaa |
5655343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 209
Target Start/End: Complemental strand, 43606770 - 43606680
Alignment:
| Q |
119 |
aaattgaaataaggggaccaaaaaactgaattttgaaataggggtacc-aaacttcagaaaaatgaaaataggggcaaccaaagtgcattta |
209 |
Q |
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| T |
43606770 |
aaattgaaataagggg-ccaaaaagttgaatttaaaaataggtgtaacgaaacttcagaagaatgaaaataggggtatcaaaagtgcattta |
43606680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 205
Target Start/End: Complemental strand, 40704924 - 40704818
Alignment:
| Q |
98 |
tggggaatcaacagttagaaaaaattgaaataaggggaccaaaaaactgaattttgaaataggggtacc-aaacttcagaaaaatgaaaataggggcaac |
196 |
Q |
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| T |
40704924 |
tgggggatcaaaagttagaaaaact-gaaatagggggatgaaaaa-ctgaattttaaaataggggtaccaaaacttcaaataaataaaaatgggggcacc |
40704827 |
T |
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| Q |
197 |
caaagtgca |
205 |
Q |
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| T |
40704826 |
aaaagtgca |
40704818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 169
Target Start/End: Original strand, 10901057 - 10901121
Alignment:
| Q |
104 |
atcaacagttagaaaaaattgaaataaggggaccaaaaaactgaattttgaaataggggtaccaaa |
169 |
Q |
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| T |
10901057 |
atcaaaagttagaaaaaattgaaat-agggggccaagaaactgaatttaaaaatatgggtatcaaa |
10901121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 159
Target Start/End: Original strand, 40137561 - 40137664
Alignment:
| Q |
55 |
gaaaattttctgttactaaaagtcatgtcttttgtagtggggttggggaatcaacagttagaaaaaattgaaataaggggaccaaaaaactgaattttga |
154 |
Q |
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|||||||| |||| ||||||| ||| || ||||||| |||| || ||||||| |||||||||||||| |||||| ||| |||||| | ||||||| | |
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| T |
40137561 |
gaaaatttactgtcactaaaattcaagttttttgtaacggggc-ggtgaatcaaaagttagaaaaaattaaaataaatggatcaaaaagcagaattttaa |
40137659 |
T |
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| Q |
155 |
aatag |
159 |
Q |
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||||| |
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| T |
40137660 |
aatag |
40137664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 159
Target Start/End: Original strand, 33094665 - 33094710
Alignment:
| Q |
114 |
agaaaaaattgaaataaggggaccaaaaaactgaattttgaaatag |
159 |
Q |
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| T |
33094665 |
agaaaaaattgaattaagtggaccaaagaactgaattttaaaatag |
33094710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 2897332 - 2897392
Alignment:
| Q |
132 |
gggaccaaaaaactgaattttgaaataggggtaccaaacttcagaaaaatgaaaatagggg |
192 |
Q |
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| T |
2897332 |
gggaccaaaaaactaaatttcaaaataggggaacaaaacttcataaaaataaaagtagggg |
2897392 |
T |
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