View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15576_low_9 (Length: 235)
Name: NF15576_low_9
Description: NF15576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15576_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 35 - 220
Target Start/End: Complemental strand, 9839151 - 9838964
Alignment:
| Q |
35 |
gtttatatacatatgttaaatgtttctggtatttctgtttataaattccacaaattgacannnnnnn--aatcaaaatatagtggggaaatgttgagtga |
132 |
Q |
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| T |
9839151 |
gtttatatacatatgttaaatgttactggtatttctgtttataaattccacaaattggcatttttttttaatcaaaatatagtggggaaatgttgagtga |
9839052 |
T |
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| Q |
133 |
accaaagtaaaacagtaatatggaccgtaatatttaatcacaactttgtactctacatataactttaaaaattgcataatagaaaaaa |
220 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
9839051 |
accaaagtaaaacagtaacatggaccgtaatatttaatcacaactttgtaatctacatataactttaaaaattgcataatagaaaaaa |
9838964 |
T |
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