View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15577_high_1 (Length: 649)
Name: NF15577_high_1
Description: NF15577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15577_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 28 - 640
Target Start/End: Complemental strand, 8766690 - 8766079
Alignment:
| Q |
28 |
caagttcatttgtaaccctaacaatcgttaattggaagagaaaaatgagatatcatctttctttaatattttgttcttataaacatctcattcttgtaaa |
127 |
Q |
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||||||||||||||| ||||||||| |||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8766690 |
caagttcatttgtaatcctaacaattgttaattgaaaaa-aaaaatgagatatcatctttctttaatattttgttcttataaacatctcattcttgtaaa |
8766592 |
T |
|
| Q |
128 |
acattgtttggtgaaaatttgatatggctatagccatactaagtcttatgctacatccacccatggctaactagaatgtacacgttttaattcacactga |
227 |
Q |
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| T |
8766591 |
atattgtttggtgaaaatttgatatggctatagccatactaagtcttatgctacatccacccatggctaactggaatgtacacgttttaattcacactga |
8766492 |
T |
|
| Q |
228 |
ttttgatccttctatttttaaatttgggaatttagtctcttgtggaataggtctaaagatttttcccacaaataaaatttgcggtttattttttatgata |
327 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8766491 |
ttttgatcattctatttttaaatttgggaatttagtctcttgtggaataggtctaaagatttttcccacaaataaaatttgtggtttattttttatgata |
8766392 |
T |
|
| Q |
328 |
tgtcatattcattaatgatgtgacatattgttgattcggactag-nnnnnnnnnngaatttccaaagaatatatatgtttacatttgaagaaatttgatc |
426 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8766391 |
tgtcatattcattaatgatgtgacatattgttgatttggactagaaaaaaaaaaagaatttccaaagaatatatatgtttacatttgaagaaatttgatc |
8766292 |
T |
|
| Q |
427 |
aataaaactcaaccaagttgtagaagtgnnnnnnnaaaggttgtaaaagtgttttcatatcacttttctagttcaaatcaacaatgtcatgtcatttaat |
526 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8766291 |
aataaaactcaaccaagttgtagaagtgtttttttaaaggttgtaaaagtgttttcatatcacttttctagttcaaatcaacaatgtcatgtcatttaat |
8766192 |
T |
|
| Q |
527 |
gtacttccacattataaagtatgggccaaacacacaaatcaaacttaaaaataacggagattgcaatacaaaccatgatcacatcaattttagaatttga |
626 |
Q |
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||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8766191 |
gtacttccacattataaagaatgggccaaacacac-aattaaacttaaaaataacggagattgcaatacaaaccatgatcacatcaattttagaatttga |
8766093 |
T |
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| Q |
627 |
atatttagtataat |
640 |
Q |
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|||||||||||||| |
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| T |
8766092 |
atatttagtataat |
8766079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 39721563 - 39721599
Alignment:
| Q |
28 |
caagttcatttgtaaccctaacaatcgttaattggaa |
64 |
Q |
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||||||||||||||||||||||||| ||||||||||| |
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| T |
39721563 |
caagttcatttgtaaccctaacaattgttaattggaa |
39721599 |
T |
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