View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15577_high_10 (Length: 256)
Name: NF15577_high_10
Description: NF15577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15577_high_10 |
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| [»] chr3 (4 HSPs) |
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| [»] scaffold0685 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 109412 - 109158
Alignment:
| Q |
1 |
acctaaacaaggagatatcacaaattaaaagttgacgaacttcttttctttcaaactttcaacagtttccttgatgctcacttccaaaggagtatattca |
100 |
Q |
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| T |
109412 |
acctaaacaaggagatatcacaaattaaaagttgacgaacttcttttctttcaaactttcaacagtttccttgatgctcacttccaaaggagtatattca |
109313 |
T |
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| Q |
101 |
attcccaaactctttgccttttctttggaaaactgatatgtaggcacatatggcttatcgtccgcacacctggtaacatagttaacaaagtgaagacgat |
200 |
Q |
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| T |
109312 |
attcccaaactcgttgccttttctttggaaaactgatatgtaggcacatatggcttatcgtccgcacacctggtaacatagttaacaaagtgaagacgat |
109213 |
T |
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| Q |
201 |
attagaaaaatgtaaatacagaaatggacagaatgatgaatcatttttatagtaac |
256 |
Q |
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| T |
109212 |
attagaaaaatgtaaatacagaaatggacagaatgatgaatca-ttttatagtaac |
109158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 3 - 216
Target Start/End: Complemental strand, 90613 - 90400
Alignment:
| Q |
3 |
ctaaacaaggagatatcacaaattaaaagttgacgaacttcttttctttcaaactttcaacagtttccttgatgctcacttccaaaggagtatattcaat |
102 |
Q |
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| T |
90613 |
ctaaacaaggagataccacaaattaaaggttggcgaacttcttttctttcaaactttcaacagtctccttgatgctcacttccaaaggagtatattcaag |
90514 |
T |
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| Q |
103 |
tcccaaactctttgccttttctttggaaaactgatatgtaggcacatatggcttatcgtccgcacacctggtaacatagttaacaaagtgaagacgatat |
202 |
Q |
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| T |
90513 |
tcccaagcttttcgccttttctttggaaacctgatatataggcacatatggcttatcgtccgcacacctggtaacatagttgacaaagtgaaaacgatat |
90414 |
T |
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| Q |
203 |
tagaaaaatgtaaa |
216 |
Q |
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||||||||| |||| |
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| T |
90413 |
tagaaaaatctaaa |
90400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 159
Target Start/End: Complemental strand, 2709120 - 2708966
Alignment:
| Q |
13 |
agatatcacaaattaaaagttgacgaacttcttttctttcaaactttcaacagtttcct--------tgatgctcacttccaaaggagtatattcaattc |
104 |
Q |
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| T |
2709120 |
agatatcacaaattaaaagttggcgaacttcttttctttcaaattttccacagtctcctactctccttgatgctgacttccaaaagagttaattcaattc |
2709021 |
T |
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| Q |
105 |
ccaaactctttgccttttctttggaaaactgatatgtaggcacatatggcttatc |
159 |
Q |
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| T |
2709020 |
ccaagctcttgaccttttctttggaaacctgatatgtaggcatgtacggcttatc |
2708966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 90366 - 90330
Alignment:
| Q |
208 |
aaatgtaaatacagaaatggacagaatgatgaatcat |
244 |
Q |
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| T |
90366 |
aaatgtaaatacagaaacggacagaatgatgaatcat |
90330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 25936549 - 25936423
Alignment:
| Q |
20 |
acaaattaaaagttgacgaacttcttttctttcaaactttcaacagtttccttgatgctcacttccaaaggagtatattcaattcccaaactctttgcct |
119 |
Q |
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| T |
25936549 |
acaaattaaaagttgacgatctttttctctctgaagctttccacagtctccttgagggtgacttccaaagaagtaaactcgattcccaaactcttagcct |
25936450 |
T |
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| Q |
120 |
tttctttggaaaactgatatgtaggca |
146 |
Q |
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|||| || |||| ||||||||| |||| |
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| T |
25936449 |
tttccttagaaatctgatatgttggca |
25936423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 26105151 - 26105073
Alignment:
| Q |
68 |
tccttgatgctcacttccaaaggagtatattcaattcccaaactctttgccttttctttggaaaactgatatgtaggca |
146 |
Q |
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| T |
26105151 |
tccttgaggctgatttccaaaggagtaaactcgattccaaagctcttggccttttccttggaaatctgatatgttggca |
26105073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0685 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0685
Description:
Target: scaffold0685; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 6089 - 5922
Alignment:
| Q |
15 |
atatcacaaattaaaagttgacgaacttcttttctttcaaactttcaacagtttccttgatgctcacttccaaaggagtatattcaattcccaaactctt |
114 |
Q |
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||||||||||||| ||||| | ||||| || ||||| |||||||| || | || | | ||||||||||| ||| || |||||| ||| || |||| |
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| T |
6089 |
atatcacaaattagaagttagcaaactttttatctttgaaactttctacgatctctctaaggctcacttccaggggaataaattcaactcctaaggtctt |
5990 |
T |
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| Q |
115 |
tgccttttctttggaaaactgatatgtaggcacatatggcttatcgtccgcacacctggtaacatagt |
182 |
Q |
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| T |
5989 |
tgccttttctttggaaacctgaaatgtttgcatcaaaggcttatcgtctgcgcacctgataacatagt |
5922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 29550416 - 29550249
Alignment:
| Q |
15 |
atatcacaaattaaaagttgacgaacttcttttctttcaaactttcaacagtttccttgatgctcacttccaaaggagtatattcaattcccaaactctt |
114 |
Q |
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||||||||||||| ||||| | ||||| || ||||| |||||||| || | || | | ||||||||||| ||| || |||||| ||| || |||| |
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| T |
29550416 |
atatcacaaattagaagttagcaaactttttatctttgaaactttctacgatctctctaaggctcacttccaggggaataaattcaactcctaaggtctt |
29550317 |
T |
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| Q |
115 |
tgccttttctttggaaaactgatatgtaggcacatatggcttatcgtccgcacacctggtaacatagt |
182 |
Q |
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||||||||||||||||| |||| |||| ||| | ||||||||||| || |||||| ||||||||| |
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| T |
29550316 |
tgccttttctttggaaacctgaaatgtttgcatcaaaggcttatcgtctgcgcacctgataacatagt |
29550249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 29556792 - 29556747
Alignment:
| Q |
96 |
attcaattcccaaactctttgccttttctttggaaaactgatatgt |
141 |
Q |
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| T |
29556792 |
attcaattcccaacgtctttgccttttctttggaaatctgaaatgt |
29556747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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