View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15577_high_3 (Length: 630)
Name: NF15577_high_3
Description: NF15577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15577_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 19 - 612
Target Start/End: Original strand, 26011004 - 26011600
Alignment:
| Q |
19 |
tctttgacaaatttcaaattttgccaataatagatgccaccgaagttttggtagtttgacaaataaccaaaatttgtgtcgatagatgactcaaaatgtt |
118 |
Q |
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| T |
26011004 |
tctttgacaaatttcaaattttgccaataatagatgccaccgaagttttggtagtttgacaaataaccaaaatttgtgtcgatagatgactcaaaatgta |
26011103 |
T |
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| Q |
119 |
taacactcacatttatttcacgaaatgatgtatttcttgttgtttgtctcacacatcacgagttcaatcagaagtcactcacactgatagagtttttggt |
218 |
Q |
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| T |
26011104 |
taacactcacatttatttcacgaaatgatgtatttcttgttttttgtttcacacatcacgagttcaatcagaagtcactcacactgatagagtttttggt |
26011203 |
T |
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| Q |
219 |
actgaaagggctaaaagaattgttactaagccactttgaactaaaaactatgtccttaagtaaatca--ggggggttaaatctttattttatcatagcaa |
316 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
26011204 |
actgaacgggctaaaagaattgttactaagccactttggactaaaaactatgtccttaagtaaatcaggggggggttaaatctttattttatcatagcaa |
26011303 |
T |
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| Q |
317 |
tgtttataatagaggcccaggcccaatttgtattaggtctaggcatcagccctagttacttatagaggtgtgctaacatctccagagttatgaaatcagc |
416 |
Q |
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||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
26011304 |
tgtttgtaatagaggcccaagcccaatttgtattaggtctaggcatcagccctagttacttatagaggtgtgctaacatctctagagttatgaaatcagc |
26011403 |
T |
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| Q |
417 |
catttgttatctttcttttctttccttag-ttttttatcatttggtttagcttagaatttgttactatctgaacaagaatccatcacacaccttttaaaa |
515 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26011404 |
catttgttatctttcttttctttccttagtttttttatcatttggtttagcttagaatttgttactatctgaacaagaatccatcacacaccttttaaaa |
26011503 |
T |
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| Q |
516 |
ttattgggactatcgtttcatcattagcacactttcaagtgcaactctataaaaatctatcttccgaatgctatttccttttgcattttcttcctct |
612 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26011504 |
ttattgggactatcgtttcatcattagcacactttcaagtgcaactctataaaaatctatcttccgaatgctatttccttttgcattttcttcctct |
26011600 |
T |
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