View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15577_high_8 (Length: 361)
Name: NF15577_high_8
Description: NF15577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15577_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 111; Significance: 6e-56; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 167 - 354
Target Start/End: Complemental strand, 144809 - 144622
Alignment:
| Q |
167 |
agtcgtcaacatataagcatactacaagcattttctcaccatctgcaagcttaatgaaacttgtgtgctcatatggacatgtatgaaagcccgctatgat |
266 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||| || | || |
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| T |
144809 |
agtcatcaacatataagcatactacaagcattttttcaccatctgcaagcttaatgaaaagtgtgtgctcatatggacatttatgaaagccatctctaat |
144710 |
T |
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| Q |
267 |
gaaataagactttatacgactataccaagcccgtggtgcnnnnnnnagtccatatagtgccttctttaaattgtaaactttcttctca |
354 |
Q |
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| T |
144709 |
gaaataagactctatacgactataccaagctcgtggtgcttgttttagtccgtatagcgccttctttaacttgtaaactttcttctca |
144622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 167 - 354
Target Start/End: Complemental strand, 152830 - 152643
Alignment:
| Q |
167 |
agtcgtcaacatataagcatactacaagcattttctcaccatctgcaagcttaatgaaacttgtgtgctcatatggacatgtatgaaagcccgctatgat |
266 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||| || | || |
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| T |
152830 |
agtcatcaacatataagcatactacaagcattttttcaccatctgcaagcttaatgaaaagtgtgtgctcatatggacatttatgaaagccatctctaat |
152731 |
T |
|
| Q |
267 |
gaaataagactttatacgactataccaagcccgtggtgcnnnnnnnagtccatatagtgccttctttaaattgtaaactttcttctca |
354 |
Q |
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| T |
152730 |
gaaataagactctatacgactataccaagctcgtggtgcttgttttagtccgtatagcgccttctttaacttgtaaactttcttctca |
152643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 21 - 164
Target Start/End: Complemental strand, 145022 - 144879
Alignment:
| Q |
21 |
taggagtgcaaactgcatcgtaatcctccatttggaagctggtaaaaatctccaaaacatacttcttttgtgacataaaaattccagcaattgattgtac |
120 |
Q |
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| T |
145022 |
taggagtgcagactgcattgcaatcctccatttggaacctgctcaaaatctccaaaacatacttcttttgtgacataaaaataccaacaattgattgtac |
144923 |
T |
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| Q |
121 |
tacttcaaggacaagaaaatagtacatcagacccaaatctgtca |
164 |
Q |
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| T |
144922 |
tacctcaaggccaagaaaatagtacatcagacccaaatctgtca |
144879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 21 - 164
Target Start/End: Complemental strand, 153043 - 152900
Alignment:
| Q |
21 |
taggagtgcaaactgcatcgtaatcctccatttggaagctggtaaaaatctccaaaacatacttcttttgtgacataaaaattccagcaattgattgtac |
120 |
Q |
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|||||||||| ||||||| | |||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
153043 |
taggagtgcagactgcattgcaatcctccatttggaacctgctcaaaatctccaaaacatacttcttttgtgacataaaaataccaacaattgattgtac |
152944 |
T |
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| Q |
121 |
tacttcaaggacaagaaaatagtacatcagacccaaatctgtca |
164 |
Q |
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| T |
152943 |
tacctcaaggccaagaaaatagtacatcagacccaaatctgtca |
152900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 187 - 354
Target Start/End: Complemental strand, 27925033 - 27924866
Alignment:
| Q |
187 |
actacaagcattttctcaccatctgcaagcttaatgaaacttgtgtgctcatatggacatgtatgaaagcccgctatgatgaaataagactttatacgac |
286 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||| | ||||||||||||| ||| |||| |
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| T |
27925033 |
actacaagcattttctcaccatctgcaagcttagtgaaacttgtgtgctcatatggacatatatgaatgcccgctcttatgaaataagactctattcgac |
27924934 |
T |
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| Q |
287 |
tataccaagcccgtggtgcnnnnnnnagtccatatagtgccttctttaaattgtaaactttcttctca |
354 |
Q |
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|||||||| | |||||||| |||| |||||||| ||||||||| ||||| || ||||||||| |
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| T |
27924933 |
tataccaaactcgtggtgcttgttttagtctatatagtgtcttctttaacttgtagacattcttctca |
27924866 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 167 - 282
Target Start/End: Complemental strand, 28006013 - 28005904
Alignment:
| Q |
167 |
agtcgtcaacatataagcatactacaagcattttctcaccatctgcaagcttaatgaaacttgtgtgctcatatggacatgtatgaaagcccgctatgat |
266 |
Q |
| |
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|||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||| || |||| |
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| T |
28006013 |
agtcatcaacatataagcatactacaatcattttctcaccatcggcaagcttaatgaaaattgtgtgctcatatggac------gaaagcccactctgat |
28005920 |
T |
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| Q |
267 |
gaaataagactttata |
282 |
Q |
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||||||||||| |||| |
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| T |
28005919 |
gaaataagactctata |
28005904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 167 - 354
Target Start/End: Complemental strand, 24326993 - 24326806
Alignment:
| Q |
167 |
agtcgtcaacatataagcatactacaagcattttctcaccatctgcaagcttaatgaaacttgtgtgctcatatggacatgtatgaaagcccgctatgat |
266 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||| ||| | || |
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| T |
24326993 |
agtcatcaacatataagcatactacaagcattttctcaccatctgcaagcttaatgaaaagtgtgtgctcatatggacatttttgaaagccagctctaat |
24326894 |
T |
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| Q |
267 |
gaaataagactttatacgactataccaagcccgtggtgcnnnnnnnagtccatatagtgccttctttaaattgtaaactttcttctca |
354 |
Q |
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||||||||||| |||||||||||||||||| |||||||| ||||| |||| ||||||||||| |||||||||||||||||| |
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| T |
24326893 |
gaaataagactctatacgactataccaagctcgtggtgcttgttttagtccgtataacgccttctttaacttgtaaactttcttctca |
24326806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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