View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15577_low_10 (Length: 325)
Name: NF15577_low_10
Description: NF15577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15577_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 80 - 313
Target Start/End: Complemental strand, 45039770 - 45039537
Alignment:
| Q |
80 |
tttggtaattacttgcctgagcaataatggtgatgtcaagagtattttcaaatggcaagacactggaacttgttacagagagatatagaagttgaagctg |
179 |
Q |
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| T |
45039770 |
tttggtaattacttgccttggcaataatggtgatgtcaagagtatttccaaatggcaagacattgatacttgttatggacagatgaagaagttgaagctg |
45039671 |
T |
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| Q |
180 |
caacattatattggccacaatcccttcttgtatcccacaataaatcttgattgacacttccttcccaagaaccctagcatcaacctctagaagtgattca |
279 |
Q |
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| T |
45039670 |
ggacattatattgaccacaatcccttcttgcattccacaataaatcttgattaaaacttccttctctagaatcctagcttcaacctctagaagtgattca |
45039571 |
T |
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| Q |
280 |
tttcggccataacattcttcagtgttcatctcac |
313 |
Q |
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| T |
45039570 |
tttctcccgtaacattcttcagtgttcatttcac |
45039537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 78 - 313
Target Start/End: Original strand, 45082818 - 45083053
Alignment:
| Q |
78 |
tttttggtaattacttgcctgagcaataatggtgatgtcaagagtattttcaaatggcaagacactggaacttgttacagagagatatagaagttgaagc |
177 |
Q |
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| T |
45082818 |
tttttggtaattacttgcctgggcaataatagtgatgttaagagtatttccaaatggcaagacattggtagttgttatggagagatgaagaatttgaagc |
45082917 |
T |
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| Q |
178 |
tgcaacattatattggccacaatcccttcttgtatcccacaataaatcttgattgacacttccttcccaagaaccctagcatcaacctctagaagtgatt |
277 |
Q |
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| T |
45082918 |
tgcaaaattatattgaccagaatctccttttacttcccacagcgaatcttgattaacacttccttccctagaaccctcacttcaagctctggaaatgttt |
45083017 |
T |
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| Q |
278 |
catttcggccataacattcttcagtgttcatctcac |
313 |
Q |
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| T |
45083018 |
cattgtgccgataacattctttagtgttcatttcac |
45083053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 219 - 313
Target Start/End: Complemental strand, 45065543 - 45065449
Alignment:
| Q |
219 |
ataaatcttgattgacacttccttcccaagaaccctagcatcaacctctagaagtgattcatttcggccataacattcttcagtgttcatctcac |
313 |
Q |
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| T |
45065543 |
ataaatcttaattgacacttccttcccaagaactctagcatcaacctttagaagtgatttatttcggccataacattcttcagtgttcatttcac |
45065449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 129; Significance: 9e-67; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 84 - 308
Target Start/End: Complemental strand, 29377519 - 29377295
Alignment:
| Q |
84 |
gtaattacttgcctgagcaataatggtgatgtcaagagtattttcaaatggcaagacactggaacttgttacagagagatatagaagttgaagctgcaac |
183 |
Q |
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| T |
29377519 |
gtaattacttgcctgagcaataatggcgatgtcaagagtatttccaaatggcaagacattggtagttgttacggagagatgaagaagctgaagctgggac |
29377420 |
T |
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| Q |
184 |
attatattggccacaatcccttcttgtatcccacaataaatcttgattgacacttccttcccaagaaccctagcatcaacctctagaagtgattcatttc |
283 |
Q |
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| T |
29377419 |
attatattgaccacaatcccctcttgcatgccacaatgaatcttgattaacacttcattccctagaaccctagcttcaacctctacaagtgattcatttc |
29377320 |
T |
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| Q |
284 |
ggccataacattcttcagtgttcat |
308 |
Q |
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| T |
29377319 |
gcccgtaacattcttcagttttcat |
29377295 |
T |
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