View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15577_low_12 (Length: 245)
Name: NF15577_low_12
Description: NF15577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15577_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 38643098 - 38642884
Alignment:
| Q |
13 |
atgaaattcggatgttcggccaaatgaggttctggcacaaccttaaacttcccaacaataccggcaacaatccttttcatttgcataaatgccatttctt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38643098 |
atgaaattcggatgttcggccaaatgaggttctggaacaaccttaaacttcccaacaataccagcaacaatccttttcatttgcataaatgccatttctt |
38642999 |
T |
|
| Q |
113 |
tccccaaacaaatcctcggcccagcctgaaaaaccggataactataagaatctctcggcacaaaagcccgcttcccatatccatcattctccaaccacct |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38642998 |
tccccaaacaaatcctcggcccagcctgaaaaaccggataagtaaaaggatctctcggcacaaaagcccgcttcccatatccatcattctccaaccacct |
38642899 |
T |
|
| Q |
213 |
ttcgggcctaaactc |
227 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
38642898 |
ttcgggcctaaactc |
38642884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 38656006 - 38655792
Alignment:
| Q |
13 |
atgaaattcggatgttcggccaaatgaggttctggcacaaccttaaacttcccaacaataccggcaacaatccttttcatttgcataaatgccatttctt |
112 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38656006 |
atgaaatttggatgttcggccaaatgaggttctggcacaaccttaaactttccaacaataccagcaacaatccttttcatttgcataaatgccatttctt |
38655907 |
T |
|
| Q |
113 |
tccccaaacaaatcctcggcccagcctgaaaaaccggataactataagaatctctcggcacaaaagcccgcttcccatatccatcattctccaaccacct |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38655906 |
tccccaaacaaatcctcggcccagcctgaaaaaccggataagtaaaaggatctctcggcacaaaagcccgcttcccatatccatcattctccaaccacct |
38655807 |
T |
|
| Q |
213 |
ttcgggcctaaactc |
227 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
38655806 |
ttcgggcttaaactc |
38655792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 160
Target Start/End: Complemental strand, 31127820 - 31127733
Alignment:
| Q |
73 |
ccggcaacaatccttttcatttgcataaatgccatttctttccccaaacaaatcctcggcccagcctgaaaaaccggataactataag |
160 |
Q |
| |
|
|||||||| | ||||||||| |||| || |||||||| || || ||||| | ||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
31127820 |
ccggcaaccacccttttcatctgcaagaacgccatttcctttcctaaacacacccttggcccagcctgaaaaaccgcataactataag |
31127733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 31132498 - 31132441
Alignment:
| Q |
103 |
gccatttctttccccaaacaaatcctcggcccagcctgaaaaaccggataactataag |
160 |
Q |
| |
|
|||||||||||||| ||||| | |||||||||||| ||||||| ||||||| |||||| |
|
|
| T |
31132498 |
gccatttctttccctaaacacaccctcggcccagcttgaaaaatcggataagtataag |
31132441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 31078472 - 31078415
Alignment:
| Q |
103 |
gccatttctttccccaaacaaatcctcggcccagcctgaaaaaccggataactataag |
160 |
Q |
| |
|
|||||||| || || ||||| | |||||||||||| |||||||||| ||||||||||| |
|
|
| T |
31078472 |
gccatttcctttcctaaacacaccctcggcccagcttgaaaaaccgcataactataag |
31078415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University