View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15577_low_13 (Length: 238)
Name: NF15577_low_13
Description: NF15577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15577_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 39555524 - 39555609
Alignment:
| Q |
14 |
atttgaagattcaaattcaaactttgaagattaatatagtttactaataagaagaaagaaaattattttgacaattgaaaagttgtc |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||| |
|
|
| T |
39555524 |
atttgaagattcaaattcaaaatttgaagattaatatagtttactaataataa-aaaaaaaattattttgacaattgaaaagttgtc |
39555609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 207
Target Start/End: Original strand, 39555668 - 39555710
Alignment:
| Q |
165 |
gtctttaaagttgacacattttggttcaaatggattctcttaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39555668 |
gtctttaaagttgacacattttggttgaaatggattctcttaa |
39555710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University