View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15577_low_14 (Length: 230)
Name: NF15577_low_14
Description: NF15577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15577_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 212
Target Start/End: Complemental strand, 29059367 - 29059170
Alignment:
| Q |
15 |
aaaatccatcacttggagataatccaccactcccatcactagggaagctcaccaacaccttcccaccattataatttgaactttgtttgttgaagtaatc |
114 |
Q |
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| T |
29059367 |
aaaatccatcacttggagataatccaccactcccatcactaaggaagctcaccaacaccttcccaccattataatttgaactttgtttgttgaagtaatc |
29059268 |
T |
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| Q |
115 |
tataaattgggacacacttgtacctttatcataagcataaaattgaaaattaacataatctataagatgtccataactcttccataaggctaagtagt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29059267 |
aataaattgggacacacttgtacctttatcataagcataaaattgaaaattaacataatctataagatgtccataactcttccataaggctaagtagt |
29059170 |
T |
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Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 34 - 210
Target Start/End: Complemental strand, 40993866 - 40993690
Alignment:
| Q |
34 |
taatccaccactcccatcactagggaagctcaccaacaccttcccaccattataatttgaactttgtttgttgaagtaatctataaattgggacacactt |
133 |
Q |
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||||||| ||||||||||||| || |||||||| || || ||| |||||||||||| |||||||| ||| | ||||| |||||||| | ||| | |
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| T |
40993866 |
taatccagtactcccatcactaacaaaactcaccaaaactttttcactattataatttgagctttgtttattgtaataatcaataaattgtgccactgtg |
40993767 |
T |
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| Q |
134 |
gtacctttatcataagcataaaattgaaaattaacataatctataagatgtccataactcttccataaggctaagta |
210 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||| |
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| T |
40993766 |
gtacttttatcatatgcataaaattgaaaattaacataatctataatgttactataactcttccataaggctaagta |
40993690 |
T |
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