View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15577_low_2 (Length: 641)

Name: NF15577_low_2
Description: NF15577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15577_low_2
NF15577_low_2
[»] chr6 (16 HSPs)
chr6 (120-623)||(1039227-1039730)
chr6 (1-117)||(28996714-28996830)
chr6 (1-101)||(18339106-18339206)
chr6 (1-117)||(29743267-29743383)
chr6 (164-262)||(1037408-1037504)
chr6 (1-101)||(34948825-34948925)
chr6 (1-117)||(398601-398717)
chr6 (16-121)||(24697899-24698004)
chr6 (1-85)||(33229403-33229487)
chr6 (5-115)||(31028435-31028545)
chr6 (1-101)||(13837821-13837921)
chr6 (65-117)||(13647001-13647053)
chr6 (65-117)||(34385519-34385571)
chr6 (64-115)||(2753336-2753387)
chr6 (64-122)||(21149331-21149389)
chr6 (16-118)||(24695471-24695572)
[»] chr4 (42 HSPs)
chr4 (1-125)||(6690302-6690426)
chr4 (1-117)||(30216809-30216925)
chr4 (1-117)||(43143651-43143767)
chr4 (1-117)||(3292963-3293079)
chr4 (1-131)||(10352951-10353081)
chr4 (5-122)||(50205148-50205265)
chr4 (1-115)||(42333843-42333957)
chr4 (1-117)||(20129294-20129410)
chr4 (1-117)||(26439346-26439462)
chr4 (1-117)||(34407351-34407467)
chr4 (1-113)||(48989316-48989428)
chr4 (5-112)||(30109945-30110052)
chr4 (1-101)||(25930708-25930808)
chr4 (5-122)||(36382417-36382533)
chr4 (1-117)||(13012172-13012288)
chr4 (1-117)||(26448037-26448152)
chr4 (1-117)||(29996050-29996166)
chr4 (5-117)||(30077702-30077813)
chr4 (1-117)||(43355888-43356004)
chr4 (1-117)||(47500757-47500873)
chr4 (1-91)||(17511301-17511391)
chr4 (4-89)||(48129978-48130063)
chr4 (5-84)||(44156668-44156747)
chr4 (4-117)||(28877320-28877433)
chr4 (1-98)||(29319772-29319869)
chr4 (1-113)||(45194164-45194276)
chr4 (16-117)||(27363345-27363446)
chr4 (1-77)||(35545977-35546053)
chr4 (63-117)||(7769312-7769366)
chr4 (64-117)||(49908782-49908835)
chr4 (8-76)||(6254569-6254637)
chr4 (64-122)||(5517494-5517552)
chr4 (65-117)||(6212029-6212081)
chr4 (65-117)||(17554980-17555032)
chr4 (5-88)||(40529028-40529111)
chr4 (1-66)||(1817752-1817817)
chr4 (1-46)||(6235575-6235620)
chr4 (64-117)||(50720476-50720529)
chr4 (68-117)||(13393004-13393053)
chr4 (68-117)||(13396143-13396192)
chr4 (16-121)||(20113771-20113876)
chr4 (65-117)||(12680193-12680245)
[»] chr2 (23 HSPs)
chr2 (1-122)||(8147330-8147451)
chr2 (1-117)||(45418567-45418683)
chr2 (1-117)||(44084670-44084786)
chr2 (1-117)||(770978-771099)
chr2 (1-98)||(41251701-41251798)
chr2 (1-101)||(42439986-42440086)
chr2 (1-117)||(6403871-6403987)
chr2 (5-117)||(8059404-8059516)
chr2 (1-103)||(26237955-26238056)
chr2 (1-95)||(18981622-18981716)
chr2 (4-101)||(2958171-2958267)
chr2 (1-101)||(35962715-35962815)
chr2 (1-83)||(12756904-12756986)
chr2 (1-101)||(17445108-17445206)
chr2 (1-101)||(32127208-32127308)
chr2 (1-122)||(31581689-31581810)
chr2 (5-98)||(16405603-16405696)
chr2 (1-114)||(4555278-4555390)
chr2 (1-82)||(26162766-26162847)
chr2 (11-92)||(7072627-7072710)
chr2 (45-117)||(34523224-34523296)
chr2 (1-76)||(2285887-2285962)
chr2 (22-81)||(34905969-34906028)
[»] chr3 (20 HSPs)
chr3 (1-117)||(45182965-45183081)
chr3 (1-117)||(11018279-11018395)
chr3 (7-117)||(6503642-6503752)
chr3 (1-117)||(6930961-6931077)
chr3 (6-117)||(33040937-33041048)
chr3 (5-117)||(19565572-19565684)
chr3 (1-114)||(27935165-27935278)
chr3 (1-122)||(34084189-34084310)
chr3 (1-101)||(19390146-19390246)
chr3 (1-117)||(39771774-39771890)
chr3 (1-117)||(45335859-45335974)
chr3 (1-100)||(22968511-22968610)
chr3 (1-100)||(6269493-6269592)
chr3 (5-113)||(35514254-35514358)
chr3 (1-88)||(40081807-40081893)
chr3 (5-79)||(5135291-5135365)
chr3 (64-117)||(6890982-6891035)
chr3 (1-113)||(5354697-5354809)
chr3 (44-119)||(22922139-22922214)
chr3 (95-127)||(50663288-50663320)
[»] chr8 (15 HSPs)
chr8 (1-123)||(23402086-23402208)
chr8 (1-114)||(34136892-34137005)
chr8 (1-115)||(4403994-4404108)
chr8 (1-103)||(16788092-16788194)
chr8 (1-124)||(36408528-36408651)
chr8 (1-79)||(9877242-9877320)
chr8 (12-117)||(2729274-2729379)
chr8 (1-85)||(3435285-3435369)
chr8 (1-101)||(29728453-29728553)
chr8 (1-119)||(15838268-15838385)
chr8 (1-100)||(39914516-39914614)
chr8 (1-87)||(3648861-3648947)
chr8 (8-78)||(40470567-40470637)
chr8 (16-121)||(10397122-10397227)
chr8 (1-69)||(42230971-42231037)
[»] chr5 (22 HSPs)
chr5 (1-122)||(17332618-17332739)
chr5 (1-117)||(31501783-31501899)
chr5 (1-117)||(31680351-31680467)
chr5 (1-117)||(37254625-37254741)
chr5 (1-117)||(12278927-12279043)
chr5 (1-101)||(13817977-13818077)
chr5 (1-87)||(33430335-33430421)
chr5 (1-101)||(10033927-10034027)
chr5 (1-123)||(1776443-1776565)
chr5 (1-117)||(26283385-26283501)
chr5 (1-101)||(39434696-39434796)
chr5 (1-117)||(36291355-36291471)
chr5 (1-101)||(36293688-36293788)
chr5 (1-82)||(43068896-43068977)
chr5 (4-88)||(28801300-28801384)
chr5 (4-99)||(19985941-19986036)
chr5 (5-101)||(3155702-3155798)
chr5 (1-101)||(39657573-39657673)
chr5 (1-83)||(16155015-16155097)
chr5 (16-117)||(202623-202724)
chr5 (1-71)||(16333943-16334013)
chr5 (45-117)||(26543876-26543948)
[»] chr7 (22 HSPs)
chr7 (1-117)||(34389123-34389239)
chr7 (1-117)||(37002211-37002327)
chr7 (1-113)||(8867798-8867910)
chr7 (1-117)||(33685548-33685664)
chr7 (1-117)||(26624729-26624846)
chr7 (1-101)||(5555487-5555587)
chr7 (1-121)||(8394105-8394225)
chr7 (4-92)||(35090177-35090265)
chr7 (1-98)||(3114163-3114260)
chr7 (1-118)||(36630799-36630916)
chr7 (1-100)||(14777174-14777273)
chr7 (5-122)||(7002704-7002821)
chr7 (5-122)||(7048575-7048692)
chr7 (1-117)||(43184535-43184651)
chr7 (1-78)||(38638303-38638380)
chr7 (5-82)||(40920074-40920151)
chr7 (1-83)||(36658199-36658281)
chr7 (11-122)||(26502789-26502899)
chr7 (11-122)||(26589815-26589925)
chr7 (65-122)||(37966614-37966671)
chr7 (56-103)||(10876829-10876876)
chr7 (1-34)||(10868542-10868575)
[»] chr1 (15 HSPs)
chr1 (4-117)||(35907536-35907649)
chr1 (1-117)||(17445297-17445413)
chr1 (1-117)||(3828968-3829084)
chr1 (5-117)||(41972346-41972457)
chr1 (1-117)||(321444-321560)
chr1 (1-117)||(26144239-26144355)
chr1 (1-97)||(7433449-7433545)
chr1 (5-101)||(32982127-32982223)
chr1 (1-101)||(42311008-42311108)
chr1 (1-93)||(23313246-23313339)
chr1 (1-117)||(33489671-33489787)
chr1 (65-117)||(44352614-44352666)
chr1 (64-117)||(31866961-31867014)
chr1 (38-122)||(48901209-48901292)
chr1 (16-82)||(35951427-35951493)
[»] scaffold0154 (1 HSPs)
scaffold0154 (5-117)||(31464-31576)
[»] scaffold0502 (1 HSPs)
scaffold0502 (1-101)||(5230-5330)
[»] scaffold0069 (1 HSPs)
scaffold0069 (1-101)||(17842-17942)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-117)||(480524-480640)
[»] scaffold2142 (1 HSPs)
scaffold2142 (1-117)||(506-622)
[»] scaffold0041 (1 HSPs)
scaffold0041 (5-82)||(52944-53021)
[»] scaffold0769 (1 HSPs)
scaffold0769 (45-117)||(1261-1333)
[»] scaffold0012 (1 HSPs)
scaffold0012 (44-108)||(194021-194085)


Alignment Details
Target: chr6 (Bit Score: 492; Significance: 0; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 120 - 623
Target Start/End: Original strand, 1039227 - 1039730
Alignment:
Q  120 tgaatgaaaggtgtaacttgatgattggtcctcttgagtaagacatggattgtgcttcatatttggttggaccagatttgtccacacaagttgaaatcaa 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1039227 tgaatgaaaggtgtaacttgatgattggtcctcttgagtaagacatggattgtgcttcatatttggttggaccagatttgtccacacaagttgaaatcaa 1039326  T
Q  220 atctaacggtgaaactcataatttcttctcatataaatacccctaagccctagcatctcttcatcattcatttcacaaccctaatatataatctactaca 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1039327 atctaacggtgaaactcataatttcttctcatataaatacccctaaaccctagcatctcttcatcattcatttcacaaccctaatatataatctactaca 1039426  T
Q  320 acctccactctcttaattttatttcactaccactattctccctttaaatcccttccttcgtttatatttcctatggttgaagtatttttgtgacttattt 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1039427 acctccactctcttaattttatttcactaccactattctccctttaaatcccttccttcgtttatatttcctatggttgaagtatttttgtgacttattt 1039526  T
Q  420 actgattttttgttttgttcataagttcattctttgtaaactatttaatttattatattttcctgtcgataattgtaaatactaattttctatgtgttca 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1039527 actgattttttgttttgttcataagttcattctttgtaaactatttaatttattatattttcctgtcgataattgtaaatactaattttctatgtgttca 1039626  T
Q  520 ttgtatcagtttgtgagtataagtgagtaaagggattcatgaaaattataacttgggttaatatacactgatgacctatgttataatttttaagagtcct 619  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1039627 ttgtatcagtttgtgagtataagtgagtaaagggattcgtgaaaattataacttgggttaatatacactgatgacctatgttataattttttagagtcct 1039726  T
Q  620 tctt 623  Q
    ||||    
T  1039727 tctt 1039730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 28996830 - 28996714
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||    
T  28996830 ttgcccaaatttttctttttgtaagtgtgttaattgacttttaggttgggtctaatgcgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgc 28996731  T
Q  101 cggacggtgaaaccgcc 117  Q
    ||| |||||||||||||    
T  28996730 cgggcggtgaaaccgcc 28996714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 18339206 - 18339106
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    ||||||||| |||||||||||||||||||||||||| ||||| | |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  18339206 ttgcccaaaattttctttttgtaagtgtgttaattggcttttagattgggtctaatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgc 18339107  T
Q  101 c 101  Q
    |    
T  18339106 c 18339106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 29743383 - 29743267
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||| ||||| |||||||||  |||||| |||||||||||||||||| ||||||||||| |||||||||| |||||||||| |||     
T  29743383 ttgcccaaatttttctttctgtaaatgtgttaatgaactttttggttgggtctaatgtgcaaaaattatcgattgagcccgggcaaccgcccgggatcgt 29743284  T
Q  101 cggacggtgaaaccgcc 117  Q
    |||||||||||||||||    
T  29743283 cggacggtgaaaccgcc 29743267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 164 - 262
Target Start/End: Original strand, 1037408 - 1037504
Alignment:
Q  164 atggattgtgcttcatatttggttggaccagatttgtccacacaagttgaaatcaaatctaacggtgaaactcataatttcttctcatataaatacccc 262  Q
    ||||||||||||||||  ||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1037408 atggattgtgcttcat--ttggttggactggatttgtccacaaaagttgaaatcaaatctaacggtgaaactcataatttcttctcatataaatacccc 1037504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 34948825 - 34948925
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||| ||||||||| | ||||||||||| |||||||||||| ||||||||||||||||| ||||||||||| ||||||||    
T  34948825 ttgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcctgggcgaccgcctggggtcgc 34948924  T
Q  101 c 101  Q
    |    
T  34948925 c 34948925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 398717 - 398601
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||| ||| |||||||||   ||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  398717 ttgcccaaatttttctttttataaatgtgttaatgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 398618  T
Q  101 cggacggtgaaaccgcc 117  Q
       |||||| |||||||    
T  398617 tacacggtggaaccgcc 398601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 24697899 - 24698004
Alignment:
Q  16 tttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccg 115  Q
    ||||||||||||||||||| | ||||||||||||| |||||||| | ||||||||||| ||||||||||||  | ||||||||||||| |||||||||||    
T  24697899 tttttgtaagtgtgttaatgggcttttgggttgggcctaatgtgaaaaaattatcgattgagcccgggcgagtgtccggggtcgccgggcggtgaaaccg 24697998  T
Q  116 ccactg 121  Q
    ||||||    
T  24697999 ccactg 24698004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 33229403 - 33229487
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcg 85  Q
    ||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||| || |||| ||||||||||||||||||    
T  33229403 ttgcccaaatttttctttttggaaatgtgttaatggacttttgggttgggtctaatgtacaaaaatgatcgatcgagcccgggcg 33229487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 5 - 115
Target Start/End: Original strand, 31028435 - 31028545
Alignment:
Q  5 ccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgccgga 104  Q
    ||||| ||| |||||||||| |||||||||   ||||| |||||| ||||||||||| ||||||||||||||| |||||| ||||| ||||||||||||     
T  31028435 ccaaaatttcctttttgtaaatgtgttaatgagcttttaggttggatctaatgtgcaaaaattatcgatcgagtccgggcaaccgctcggggtcgccggg 31028534  T
Q  105 cggtgaaaccg 115  Q
    |||||||||||    
T  31028535 cggtgaaaccg 31028545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 13837921 - 13837821
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||| |||||| ||   ||||||||||| ||||||||| || |||||||||||||| |||| |||| |||||||||||||    
T  13837921 ttgcccaaatttttctttttgtaaatgtgttgatgtgcttttgggttgagtctaatgtacaaaaattatcgatcgaacccgagcgatcgcccggggtcgc 13837822  T
Q  101 c 101  Q
    |    
T  13837821 c 13837821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 13647053 - 13647001
Alignment:
Q  65 attatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgcc 117  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  13647053 attatcgatcgagcccgggcgaccgcccggggtcgccgggtggtgaaaccgcc 13647001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 34385519 - 34385571
Alignment:
Q  65 attatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgcc 117  Q
    ||||||||||||||| |||| |||||||||||||||||| |||||||||||||    
T  34385519 attatcgatcgagccagggcaaccgcccggggtcgccgggcggtgaaaccgcc 34385571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 2753387 - 2753336
Alignment:
Q  64 aattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccg 115  Q
    |||||||||| |||| ||||||||||||  ||||||||||||||||||||||    
T  2753387 aattatcgattgagctcgggcgaccgcctagggtcgccggacggtgaaaccg 2753336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 64 - 122
Target Start/End: Original strand, 21149331 - 21149389
Alignment:
Q  64 aattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccactga 122  Q
    ||||||||||| |||||| ||||||||||| |||| |||| ||||||||| ||| ||||    
T  21149331 aattatcgatcaagcccgagcgaccgcccgaggtcaccgggcggtgaaactgcccctga 21149389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 24695572 - 24695471
Alignment:
Q  16 tttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccg 115  Q
    ||||||||||||||||||| | ||||||||||| | |||||||  | |||| ||||||  |||| ||||||  | ||| ||||  |||||||||||||||    
T  24695572 tttttgtaagtgtgttaatgggcttttgggttgagcctaatgttaaaaaatgatcgatttagcctgggcgagtgtccgaggtc-tcggacggtgaaaccg 24695474  T
Q  116 cca 118  Q
    |||    
T  24695473 cca 24695471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 4e-52; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 6690302 - 6690426
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  6690302 ttgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgggtctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 6690401  T
Q  101 cggacggtgaaaccgccactgaatg 125  Q
    ||| ||||||||||||| |||||||    
T  6690402 cgggcggtgaaaccgcccctgaatg 6690426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 30216809 - 30216925
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30216809 ttgcccaaatttttctttttgtaagtgtgttaattagcttttgggttgggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 30216908  T
Q  101 cggacggtgaaaccgcc 117  Q
    ||||||||||| |||||    
T  30216909 cggacggtgaatccgcc 30216925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 43143651 - 43143767
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||     
T  43143651 ttgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgt 43143750  T
Q  101 cggacggtgaaaccgcc 117  Q
    |||||||||||||||||    
T  43143751 cggacggtgaaaccgcc 43143767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 3292963 - 3293079
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |    
T  3292963 ttgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgggtctaatgggcaaaaattatcgatcgagcccgggcgaccgcccggggtcac 3293062  T
Q  101 cggacggtgaaaccgcc 117  Q
     || |||||||||||||    
T  3293063 tgggcggtgaaaccgcc 3293079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 10352951 - 10353081
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    ||||||||||||||| |||||||| ||||||||| ||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||    
T  10352951 ttgcccaaatttttccttttgtaaatgtgttaatggactttttggttgggtctaatgtgcaaaaattatcgattgagcccgggcgaccgccaggggtcgc 10353050  T
Q  101 cggacggtgaaaccgccactgaatgaaaggt 131  Q
    ||||||||||||||||| ||| ||| |||||    
T  10353051 cggacggtgaaaccgcccctgtatgtaaggt 10353081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 5 - 122
Target Start/End: Original strand, 50205148 - 50205265
Alignment:
Q  5 ccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgccgga 104  Q
    |||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||| ||||||||    
T  50205148 ccaattttttctttttgtaagtgtgttaattggcttttgggttggatctaatgtgcaaaaattatcgatcgagctcgggcgaccgcccgggatcgccgga 50205247  T
Q  105 cggtgaaaccgccactga 122  Q
    ||||||||||||| ||||    
T  50205248 cggtgaaaccgcccctga 50205265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 42333843 - 42333957
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||| |||||||| |||||||||||| ||||    
T  42333843 ttgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgattgagcccggacgaccgcccgggatcgc 42333942  T
Q  101 cggacggtgaaaccg 115  Q
     ||||||||||||||    
T  42333943 tggacggtgaaaccg 42333957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 20129410 - 20129294
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||| ||||||||| | ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  20129410 ttgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 20129311  T
Q  101 cggacggtgaaaccgcc 117  Q
       |||||| |||||||    
T  20129310 tacacggtggaaccgcc 20129294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 26439346 - 26439462
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||| ||| ||||||||| | ||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  26439346 ttgcccaaatttttctttttataaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgc 26439445  T
Q  101 cggacggtgaaaccgcc 117  Q
       |||||| |||||||    
T  26439446 tacacggtggaaccgcc 26439462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 34407351 - 34407467
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||| ||| ||||||||| | ||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  34407351 ttgcccaaatttttctttttataaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgc 34407450  T
Q  101 cggacggtgaaaccgcc 117  Q
       |||||| |||||||    
T  34407451 tacacggtggaaccgcc 34407467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 48989428 - 48989316
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||| |||||||||||||| |||||  |||||||||| ||||     
T  48989428 ttgcccaaatttttctttttgtaagtgtgttaatggacttttgagttgggtttaatgtgcaaaaattatcgatcgaacccggttgaccgcccggagtcgt 48989329  T
Q  101 cggacggtgaaac 113  Q
    ||| |||||||||    
T  48989328 cgggcggtgaaac 48989316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 30110052 - 30109945
Alignment:
Q  5 ccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgccgga 104  Q
    |||||||||||||||||||||||||||||| | |||| || |||||||||||||||| ||||||||||||||| ||||||||||| ||||||||| |||     
T  30110052 ccaaatttttctttttgtaagtgtgttaatggtctttgggtttgggtctaatgtgcaaaaattatcgatcgagtccgggcgaccgtccggggtcgtcggg 30109953  T
Q  105 cggtgaaa 112  Q
    ||||||||    
T  30109952 cggtgaaa 30109945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 25930808 - 25930708
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||| ||||||||| | ||||||||||| || ||||||||| ||||||| |||||||||||||||||||||| |||||||    
T  25930808 ttgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtttaatgtgcaaaaattatagatcgagcccgggcgaccgcccagggtcgc 25930709  T
Q  101 c 101  Q
    |    
T  25930708 c 25930708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 5 - 122
Target Start/End: Original strand, 36382417 - 36382533
Alignment:
Q  5 ccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgccgga 104  Q
    ||||||||||||||| |||| ||||||||| ||||||| ||||| || ||||||||| ||||||| |||||||||||||||||||||||||||||||  |    
T  36382417 ccaaatttttctttt-gtaaatgtgttaatggactttttggttgagtttaatgtgcaaaaattatggatcgagcccgggcgaccgcccggggtcgccata 36382515  T
Q  105 cggtgaaaccgccactga 122  Q
    ||||  ||||||||||||    
T  36382516 cggtagaaccgccactga 36382533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 13012288 - 13012172
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||| ||| |||||||||   ||||| |||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13012288 ttgcccaaatttttctttttataaatgtgttaatgagctttttggttgaatctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 13012189  T
Q  101 cggacggtgaaaccgcc 117  Q
       |||||| |||||||    
T  13012188 tacacggtggaaccgcc 13012172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 26448152 - 26448037
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||| | | ||||||||| ||||||||||||||| |||| ||| ||| ||| |||||    
T  26448152 ttgcccaaattttt-tttttgtaagtgtgttaatggacttttgggttagatttaatgtgcaaaaattatcgatcgagtccggacgatcgcacggagtcgc 26448054  T
Q  101 cggacggtgaaaccgcc 117  Q
    ||| |||||||||||||    
T  26448053 cgggcggtgaaaccgcc 26448037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 29996050 - 29996166
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    ||||||||||||||||||| |||| ||||||||| ||||||| ||||| ||||||||| || ||||||||||||||| |||| |||||| ||||| |||     
T  29996050 ttgcccaaatttttcttttcgtaaatgtgttaatggactttttggttgagtctaatgtacaaaaattatcgatcgagtccggacgaccgtccgggatcgt 29996149  T
Q  101 cggacggtgaaaccgcc 117  Q
    ||| |||||||||||||    
T  29996150 cgggcggtgaaaccgcc 29996166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 5 - 117
Target Start/End: Original strand, 30077702 - 30077813
Alignment:
Q  5 ccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgccgga 104  Q
    |||||||||||||||||||| |||||||||  |||||| |||||||||||||||||| || |||||||| ||||| ||||||||||||| ||||| |||     
T  30077702 ccaaatttttctttttgtaaatgtgttaatgaactttttggttgggtctaatgtgcaaaatttatcgattgagcctgggcgaccgcccgaggtcg-cggg 30077800  T
Q  105 cggtgaaaccgcc 117  Q
    |||||||||||||    
T  30077801 cggtgaaaccgcc 30077813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 43356004 - 43355888
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||| ||| ||||||||| | ||||||||||| |||||||||||| |||||||||| |||||||||||||| ||| ||||||||    
T  43356004 ttgcccaaatttttctttttataaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgactgcctggggtcgc 43355905  T
Q  101 cggacggtgaaaccgcc 117  Q
       |||||| |||||||    
T  43355904 tacacggtggaaccgcc 43355888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 47500873 - 47500757
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||  ||| |||||||||   ||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  47500873 ttgcccaaatttttcttttcataaatgtgttaatgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 47500774  T
Q  101 cggacggtgaaaccgcc 117  Q
       |||||| |||||||    
T  47500773 tacacggtggaaccgcc 47500757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 17511301 - 17511391
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcc 91  Q
    |||||||||||||||||||||||| ||||||||| | ||||||||||| |||||||||||| ||||||||||||||| | |||||||||||    
T  17511301 ttgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagtctgggcgaccgcc 17511391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 48130063 - 48129978
Alignment:
Q  4 cccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccg 89  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||| |||| |||||||||||||||||||| ||||||    
T  48130063 cccaaatttttctttttgtaagtgtgttaatgagcttttgggttgggtctaatatgcaaaaattatcgatcgagcccggtcgaccg 48129978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 44156747 - 44156668
Alignment:
Q  5 ccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggc 84  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| | ||||||||||    
T  44156747 ccaaaattttctttttgtaagtgtgttaattggcttttgggttgggtctaatgtgcaaaaattatcggttgagcccgggc 44156668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 4 - 117
Target Start/End: Original strand, 28877320 - 28877433
Alignment:
Q  4 cccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgccgg 103  Q
    ||||||||||||||||| |||| |||||||||  ||||| |||||  ||||||||||| |||||||||||| |||||  |||||||| |||||||  |||    
T  28877320 cccaaatttttctttttataagcgtgttaattagcttttaggttgaatctaatgtgcaaaaattatcgatctagcccaagcgaccgcacggggtcatcgg 28877419  T
Q  104 acggtgaaaccgcc 117  Q
    ||||||||||||||    
T  28877420 acggtgaaaccgcc 28877433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 29319772 - 29319869
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtc 98  Q
    |||| ||||||||||||||||||| ||||||||| |  |||||||||| |||||||||||| ||||||||||||||||| || |||||||| ||||||    
T  29319772 ttgctcaaatttttctttttgtaaatgtgttaatgggattttgggttgagtctaatgtgcaaaaattatcgatcgagcctggacgaccgccaggggtc 29319869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 45194276 - 45194164
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    ||||||||  |||| ||||||||||||||||||| ||||||||||||| || ||||||||| ||||||| ||||||| |||||| | |||| |||||||     
T  45194276 ttgcccaatattttttttttgtaagtgtgttaatggacttttgggttgagtttaatgtgcaaaaattattgatcgagtccgggcaatcgcctggggtcgt 45194177  T
Q  101 cggacggtgaaac 113  Q
    ||| |||||||||    
T  45194176 cgggcggtgaaac 45194164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 27363446 - 27363345
Alignment:
Q  16 tttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccg 115  Q
    ||||||||||||||||||| | ||||||||||||| ||||| |||| |||   ||||||||||||||||||||||||| |||||||  ||||| ||||||    
T  27363446 tttttgtaagtgtgttaatgggcttttgggttgggcctaatatgcaaaaaaattcgatcgagcccgggcgaccgcccgaggtcgccatacggtaaaaccg 27363347  T
Q  116 cc 117  Q
    ||    
T  27363346 cc 27363345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 35546053 - 35545977
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgag 77  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| ||| ||||| |||||||||    
T  35546053 ttgcccaaaattttctttttgtaagtgtgttaattggcttttgggttgggtctgatgcgcaaaaattgtcgatcgag 35545977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 63 - 117
Target Start/End: Complemental strand, 7769366 - 7769312
Alignment:
Q  63 aaattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgcc 117  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  7769366 aaattatcgatcgagcccgggcgaccgcctggggtcgccggacggtgaaaccgcc 7769312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 49908782 - 49908835
Alignment:
Q  64 aattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgcc 117  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  49908782 aattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcc 49908835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 6254637 - 6254569
Alignment:
Q  8 aatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcga 76  Q
    ||||||| |||||| |||||||||||||| |||||||||||||| ||||||||| ||||||||||||||    
T  6254637 aatttttttttttgcaagtgtgttaattgtcttttgggttgggtttaatgtgcaaaaattatcgatcga 6254569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 64 - 122
Target Start/End: Original strand, 5517494 - 5517552
Alignment:
Q  64 aattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccactga 122  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||    
T  5517494 aattatcgatcgagcccaggcgaccgcccggggtcgccgggcggtgaaaccgcccctga 5517552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 6212029 - 6212081
Alignment:
Q  65 attatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgcc 117  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  6212029 attatcgatcgagctcgggcgaccgcccgaggtcgccggacggtgaaaccgcc 6212081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 17555032 - 17554980
Alignment:
Q  65 attatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgcc 117  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  17555032 attatcgatcgagcccgggcgaccacccggggtcgtcggacggtgaaaccgcc 17554980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 88
Target Start/End: Complemental strand, 40529111 - 40529028
Alignment:
Q  5 ccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgacc 88  Q
    |||||||||||||||||||| |||||||||    |||| ||||| || ||||||||| ||||||||||||||| |||| |||||    
T  40529111 ccaaatttttctttttgtaaatgtgttaatgagtttttaggttgagtttaatgtgcaaaaattatcgatcgagtccggacgacc 40529028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 1817817 - 1817752
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaat 66  Q
    |||||||||||||||||||| ||| ||| ||||| ||||||||| |||| ||||||||||| ||||    
T  1817817 ttgcccaaatttttctttttataaatgtattaatggacttttggattggatctaatgtgcaaaaat 1817752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 6235620 - 6235575
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggt 46  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||    
T  6235620 ttgcccaaatttttctttttgtaaatgtgttaatggacttttgggt 6235575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 50720476 - 50720529
Alignment:
Q  64 aattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgcc 117  Q
    |||||| ||| ||||||||||||||||||| ||||||||| |||||||||||||    
T  50720476 aattattgattgagcccgggcgaccgcccgaggtcgccgggcggtgaaaccgcc 50720529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 13393004 - 13393053
Alignment:
Q  68 atcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgcc 117  Q
    |||||| ||||||||||||||| |||||||||| || |||||||||||||    
T  13393004 atcgattgagcccgggcgaccgtccggggtcgctgggcggtgaaaccgcc 13393053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 13396143 - 13396192
Alignment:
Q  68 atcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgcc 117  Q
    |||||| ||||||||||||||| |||||||||| || |||||||||||||    
T  13396143 atcgattgagcccgggcgaccgtccggggtcgctgggcggtgaaaccgcc 13396192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 20113876 - 20113771
Alignment:
Q  16 tttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccg 115  Q
    ||||| ||||||||||||| | |||||||||||   |||||||  | ||||||||||| |||  |||||||  | ||||||||||| | ||||| |||||    
T  20113876 tttttttaagtgtgttaatcggcttttgggttgaacctaatgtaaagaaattatcgattgagttcgggcgagtgtccggggtcgccaggcggtggaaccg 20113777  T
Q  116 ccactg 121  Q
    ||||||    
T  20113776 ccactg 20113771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 12680193 - 12680245
Alignment:
Q  65 attatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgcc 117  Q
    |||||||||||||||||||| |||||| ||||| || || |||||||||||||    
T  12680193 attatcgatcgagcccgggccaccgcctggggttgctgggcggtgaaaccgcc 12680245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 2e-50; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 8147451 - 8147330
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  8147451 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgagttgggtctaatgtgcaaagattatcgatcgagcccgggcgaccgcccggggtcgc 8147352  T
Q  101 cggacggtgaaaccgccactga 122  Q
    ||| ||||||||||||| ||||    
T  8147351 cgggcggtgaaaccgcccctga 8147330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 45418683 - 45418567
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  45418683 ttgcccaaatttttctttttgtaagtgtgttaattggcttttgggttggatctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 45418584  T
Q  101 cggacggtgaaaccgcc 117  Q
    ||| |||||||||||||    
T  45418583 cgggcggtgaaaccgcc 45418567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 44084670 - 44084786
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    ||||||||||||||||||||||||||||||||||  |||||||| |||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  44084670 ttgcccaaatttttctttttgtaagtgtgttaatgaacttttggattgggtttaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 44084769  T
Q  101 cggacggtgaaaccgcc 117  Q
    ||| |||||||||||||    
T  44084770 cgggcggtgaaaccgcc 44084786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 771099 - 770978
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccgg-----g 95  Q
    |||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||| || |||||||||||||||||||||||||||||     |    
T  771099 ttgcccaaatttttctttttgtaagtgtgttaatgggctttttggttgggtctaatgtgcaaaagttatcgatcgagcccgggcgaccgcccgggatccg 771000  T
Q  96 gtcgccggacggtgaaaccgcc 117  Q
    |||||||| |||||||||||||    
T  770999 gtcgccgggcggtgaaaccgcc 770978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 41251701 - 41251798
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtc 98  Q
    |||||||||||||||||||||||| ||||||||| | ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41251701 ttgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtc 41251798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 42440086 - 42439986
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||| ||||||||| | ||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42440086 ttgcccaaatttttctttttgtaaatgtgttaatgggcttttgggtttagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 42439987  T
Q  101 c 101  Q
    |    
T  42439986 c 42439986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 6403871 - 6403987
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||| ||| |||||||||  |||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6403871 ttgcccaaatttttctttttataaatgtgttaatgaactttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 6403970  T
Q  101 cggacggtgaaaccgcc 117  Q
       |||||| |||||||    
T  6403971 tacacggtggaaccgcc 6403987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 5 - 117
Target Start/End: Original strand, 8059404 - 8059516
Alignment:
Q  5 ccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgccgga 104  Q
    |||||||||||||||||||||||||||||||| |||||||||||  ||||||||||| ||||||||||| ||||| |||||| || ||||||||| |||     
T  8059404 ccaaatttttctttttgtaagtgtgttaattggcttttgggttgactctaatgtgcaaaaattatcgattgagcctgggcgatcggccggggtcgtcggg 8059503  T
Q  105 cggtgaaaccgcc 117  Q
    |||||||||||||    
T  8059504 cggtgaaaccgcc 8059516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 26238056 - 26237955
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||  |||||| |||| ||| ||||||||||||||||||||||||||||||||||    
T  26238056 ttgcccaaatttttctttttgtaagtgtgttaatggacttttggtttgcatctaatttgca-aaaatatcgatcgagcccgggcgaccgcccggggtcgc 26237958  T
Q  101 cgg 103  Q
    |||    
T  26237957 cgg 26237955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 18981716 - 18981622
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggg 95  Q
    |||||||||||||||||||||||| ||| ||||| ||||||||||||| |||||||||||| |||||||| ||||||||||| ||||||||||||    
T  18981716 ttgcccaaatttttctttttgtaaatgttttaatggacttttgggttgagtctaatgtgcaaaaattatcaatcgagcccggacgaccgcccggg 18981622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 4 - 101
Target Start/End: Original strand, 2958171 - 2958267
Alignment:
Q  4 cccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgcc 101  Q
    ||||||||||||| ||||||| ||||||||| | ||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  2958171 cccaaatttttctctttgtaaatgtgttaatgggcttttgggttgagtctaatgtgca-aaattatcgatcgagcccggacgaccgcccggggtcgcc 2958267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 35962815 - 35962715
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    ||||||||| |||||||||||||| |||||||||   ||||||||||| |||||||||||| |||||||||||||||||||| |||||||| ||||||||    
T  35962815 ttgcccaaaattttctttttgtaaatgtgttaataagcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacgaccgcctggggtcgc 35962716  T
Q  101 c 101  Q
    |    
T  35962715 c 35962715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 12756904 - 12756986
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccggg 83  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||| ||||||    
T  12756904 ttgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgggtctaatgcgcaaaaattatcgatcgaacccggg 12756986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 17445108 - 17445206
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||| ||||||||| | ||||||||||| |||||  ||||| |||||||||||||||| |||||||||||||| ||||||    
T  17445108 ttgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtcta--gtgcaaaaattatcgatcgagctcgggcgaccgcccgaggtcgc 17445205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 32127208 - 32127308
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    ||||| |||||||||||||||||| |||||||||   ||||||||| | || ||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  32127208 ttgcctaaatttttctttttgtaaatgtgttaatgagcttttgggtcgagtttaatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgc 32127307  T
Q  101 c 101  Q
    |    
T  32127308 c 32127308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 31581689 - 31581810
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||| ||||||||| | |||||||| || ||||||| |||| ||| ||||| ||||||| ||||||||||||| ||||||    
T  31581689 ttgcccaaatttttctttttgtaaatgtgttaatgggcttttgggatgagtctaatatgcaaaaagtatcgctcgagcctgggcgaccgcccgtggtcgc 31581788  T
Q  101 cggacggtgaaaccgccactga 122  Q
    |  || ||  ||||||||||||    
T  31581789 catacagtagaaccgccactga 31581810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 16405696 - 16405603
Alignment:
Q  5 ccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtc 98  Q
    |||||||||||||||| ||| |||||||||   ||||||||||| |||||| ||||| ||||||||||| |||||||||||||||||| |||||    
T  16405696 ccaaatttttctttttataaatgtgttaatgagcttttgggttgagtctaacgtgcaaaaattatcgattgagcccgggcgaccgcccagggtc 16405603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 4555278 - 4555390
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    ||||||||| |||||||||||||||||||||||    |||||||||||||| | ||||||| ||||||||||||||| ||  ||||||||||| | ||||    
T  4555278 ttgcccaaaattttctttttgtaagtgtgttaacgagcttttgggttgggtttgatgtgcaaaaattatcgatcgagtcc-agcgaccgcccgagatcgc 4555376  T
Q  101 cggacggtgaaacc 114  Q
    ||| ||||| ||||    
T  4555377 cgggcggtggaacc 4555390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 26162766 - 26162847
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgg 82  Q
    |||||||||||||||||||||||||||||||||| |  ||||||||||  | ||||||| | ||||||||||  ||||||||    
T  26162766 ttgcccaaatttttctttttgtaagtgtgttaatgggtttttgggttgaatttaatgtgtaaaaattatcgaaggagcccgg 26162847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 7072627 - 7072710
Alignment:
Q  11 ttttctttttgtaagtgtgt--taattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgccc 92  Q
    |||||||||| |||||||||  |||| | ||||||||||| || ||||||  | ||||||||||||||||||||||||||||||    
T  7072627 ttttctttttataagtgtgtgttaatgggcttttgggttgagtttaatgtaaaaaaattatcgatcgagcccgggcgaccgccc 7072710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 45 - 117
Target Start/End: Complemental strand, 34523296 - 34523224
Alignment:
Q  45 gttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgcc 117  Q
    |||||| ||||||||   ||||||  ||||||||||||||||||||||||||||||||| |||| ||||||||    
T  34523296 gttgggcctaatgtgaggaaattacggatcgagcccgggcgaccgcccggggtcgccgggcggtaaaaccgcc 34523224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 2285962 - 2285887
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcga 76  Q
    |||| |||||||||| ||| |||| ||||||||| ||||||| |||||| | ||||||||| ||||||||||||||    
T  2285962 ttgctcaaatttttcctttcgtaaatgtgttaatagactttttggttggatttaatgtgcaaaaattatcgatcga 2285887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 34906028 - 34905969
Alignment:
Q  22 taagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccg 81  Q
    ||||||||||||| | |||||||||| ||  ||||||||| |||||||||||||||||||    
T  34906028 taagtgtgttaatgggcttttgggttaggcttaatgtgcaaaaattatcgatcgagcccg 34905969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 1e-49; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 45183081 - 45182965
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  45183081 ttgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgggtctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 45182982  T
Q  101 cggacggtgaaaccgcc 117  Q
    ||| |||||||||||||    
T  45182981 cgggcggtgaaaccgcc 45182965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 11018279 - 11018395
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||| |||||    
T  11018279 ttgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcctgggcgaccgcccggagtcgc 11018378  T
Q  101 cggacggtgaaaccgcc 117  Q
    |||||||||||||||||    
T  11018379 cggacggtgaaaccgcc 11018395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 7 - 117
Target Start/End: Original strand, 6503642 - 6503752
Alignment:
Q  7 aaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgccggacg 106  Q
    ||||||||||||||||||||||| |||||| ||||||||||| ||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||    
T  6503642 aaatttttctttttgtaagtgtgctaattggcttttgggttgagtctaatttgcaaaaataatcgatcgagcccgggcgaccgcccggggtcgccggacg 6503741  T
Q  107 gtgaaaccgcc 117  Q
    |||||||||||    
T  6503742 gtgaaaccgcc 6503752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 6930961 - 6931077
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    ||||| |||||||||||||||||| ||||||||||| |||||||||||| ||||||| ||| ||||||||||||||||||||||||||| ||||||||||    
T  6930961 ttgcctaaatttttctttttgtaaatgtgttaattggcttttgggttggatctaatgcgcaaaaattatcgatcgagcccgggcgaccgtccggggtcgc 6931060  T
Q  101 cggacggtgaaaccgcc 117  Q
    ||| |||||||||||||    
T  6931061 cgggcggtgaaaccgcc 6931077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 6 - 117
Target Start/End: Complemental strand, 33041048 - 33040937
Alignment:
Q  6 caaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgccggac 105  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||| |||| |||||||| |||||||||| ||||||||||||||||||||| |    
T  33041048 caaatttttctttttgtaagtgtgttaattagcttttgggttgggtctaatatgcaaaaattatcaatcgagcccgagcgaccgcccggggtcgccgggc 33040949  T
Q  106 ggtgaaaccgcc 117  Q
    ||||||||||||    
T  33040948 ggtgaaaccgcc 33040937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 5 - 117
Target Start/End: Original strand, 19565572 - 19565684
Alignment:
Q  5 ccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgccgga 104  Q
    |||||||||||||||||||| ||||||||| || |||| |||||||||||||||||| ||||||||||| || |||||||||||||||||| |||||||     
T  19565572 ccaaatttttctttttgtaaatgtgttaatggattttttggttgggtctaatgtgcaaaaattatcgattgaacccgggcgaccgcccgggatcgccggg 19565671  T
Q  105 cggtgaaaccgcc 117  Q
    |||||||||||||    
T  19565672 cggtgaaaccgcc 19565684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 27935278 - 27935165
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    ||||||||||||||||||||||||||||||||||   |||||||||||||| ||||||||| ||||||||||||||||||||||||| |||| |||| ||    
T  27935278 ttgcccaaatttttctttttgtaagtgtgttaatgagcttttgggttgggtttaatgtgcaaaaattatcgatcgagcccgggcgactgcccagggttgc 27935179  T
Q  101 cggacggtgaaacc 114  Q
    | | ||||||||||    
T  27935178 caggcggtgaaacc 27935165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 34084189 - 34084310
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||| ||||||||| ||||||| |||||  | ||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  34084189 ttgcccaaatttttctttttgtaaatgtgttaatggactttttggttgaatttaatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgc 34084288  T
Q  101 cggacggtgaaaccgccactga 122  Q
    |  |||||  ||||||||||||    
T  34084289 catacggtagaaccgccactga 34084310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 19390246 - 19390146
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||| ||||||||| ||||||| ||||| |||||||||||| |||||||||||||| ||||| |||||||||||||||||    
T  19390246 ttgcccaaatttttctttttgtaaatgtgttaatagacttttaggttgagtctaatgtgcaaaaattatcgatcgaacccggacgaccgcccggggtcgc 19390147  T
Q  101 c 101  Q
    |    
T  19390146 c 19390146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 39771890 - 39771774
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||| ||| ||||||||| | ||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  39771890 ttgcccaaatttttctttttataaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgc 39771791  T
Q  101 cggacggtgaaaccgcc 117  Q
       |||||| |||||||    
T  39771790 tacacggtggaaccgcc 39771774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 45335974 - 45335859
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    ||||||| |||||||||||||||| ||||||||| ||||||| |||||||||||||||| | ||||||||||| ||| ||||||||||||||| ||||||    
T  45335974 ttgcccagatttttctttttgtaaatgtgttaat-gactttttggttgggtctaatgtgtaaaaattatcgattgagtccgggcgaccgcccgaggtcgc 45335876  T
Q  101 cggacggtgaaaccgcc 117  Q
    ||| |||||||||||||    
T  45335875 cgggcggtgaaaccgcc 45335859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 22968511 - 22968610
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||| ||||||||| | ||||||||||  |||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  22968511 ttgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttaagtctaatgtgcaaaaattatcgatcgagcccggacgaccgcccggggtcgc 22968610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 6269493 - 6269592
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||| ||||||||| | ||||||||||| |||||||||||| ||||||||||||||| |||| |||||||||||| ||||    
T  6269493 ttgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgggatcgc 6269592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 5 - 113
Target Start/End: Complemental strand, 35514358 - 35514254
Alignment:
Q  5 ccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgccgga 104  Q
    ||||||||||||||||||    |||||||| |||||||||||||| |||| | |||  |||||||||||||||||||| |||||| |||||||||||||     
T  35514358 ccaaatttttctttttgt----gtgttaatggacttttgggttggatctagtatgcgaaaattatcgatcgagcccggacgaccgtccggggtcgccggg 35514263  T
Q  105 cggtgaaac 113  Q
    |||||||||    
T  35514262 cggtgaaac 35514254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 40081807 - 40081893
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgacc 88  Q
    |||||||||||||||||||||||| |||||||||   ||||||| ||| ||||||||| || ||||||||||||||||||||||||||    
T  40081807 ttgcccaaatttttctttttgtaaatgtgttaatgagcttttgg-ttgagtctaatgttcaaaaattatcgatcgagcccgggcgacc 40081893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 5135365 - 5135291
Alignment:
Q  5 ccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcc 79  Q
    ||||||||||||||||||||||||||||||   ||||| ||||||||||||||| || |||| ||||||||||||    
T  5135365 ccaaatttttctttttgtaagtgtgttaatgagcttttaggttgggtctaatgtacaaaaataatcgatcgagcc 5135291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 6891035 - 6890982
Alignment:
Q  64 aattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgcc 117  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  6891035 aattatcgatcgagcccgggcgaccgcccggtgtcgccgggcggtgaaaccgcc 6890982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 5354809 - 5354697
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||| ||||| |||||  |||||||| ||| | | | | ||||||  ||||||||   ||||||  ||||||||||||||||||||||||||||||    
T  5354809 ttgcccaatttttttttttttgaagtgtgtaaatgggcctataggttggacctaatgtgagaaaattaaggatcgagcccgggcgaccgcccggggtcgc 5354710  T
Q  101 cggacggtgaaac 113  Q
    ||| |||||||||    
T  5354709 cgggcggtgaaac 5354697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 119
Target Start/End: Complemental strand, 22922214 - 22922139
Alignment:
Q  44 ggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccac 119  Q
    ||||| || ||||||||| |||| |||||||||||||| ||||||||||||| |||||  |||||| |||||||||    
T  22922214 ggttgagtttaatgtgcaaaaatgatcgatcgagcccgagcgaccgcccgggatcgccatacggtggaaccgccac 22922139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 50663288 - 50663320
Alignment:
Q  95 ggtcgccggacggtgaaaccgccactgaatgaa 127  Q
    ||||||||||||||||||||||||||| |||||    
T  50663288 ggtcgccggacggtgaaaccgccactgcatgaa 50663320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 2e-48; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 23402208 - 23402086
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||    
T  23402208 ttgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgggtctaatatgcaaagattatcgatcgagcccgggcgaccgcccggggtcgc 23402109  T
Q  101 cggacggtgaaaccgccactgaa 123  Q
    ||| ||||||||||||| |||||    
T  23402108 cgggcggtgaaaccgcccctgaa 23402086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 34136892 - 34137005
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  34136892 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgctcggggtcgc 34136991  T
Q  101 cggacggtgaaacc 114  Q
    | ||||||||||||    
T  34136992 cagacggtgaaacc 34137005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 4404108 - 4403994
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  4404108 ttgcccaaatttttctttttgtaagtatgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcctggggtcgc 4404009  T
Q  101 cggacggtgaaaccg 115  Q
    ||| | |||||||||    
T  4404008 cggccagtgaaaccg 4403994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 16788092 - 16788194
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  16788092 ttgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggttgc 16788191  T
Q  101 cgg 103  Q
    |||    
T  16788192 cgg 16788194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 36408651 - 36408528
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    ||||| ||| |||||||||||||| ||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  36408651 ttgccaaaaattttctttttgtaaatgtgttaatggacttttgggttggatctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgaggtcgc 36408552  T
Q  101 cggacggtgaaaccgccactgaat 124  Q
    ||| |||||||||| || ||||||    
T  36408551 cgggcggtgaaaccacccctgaat 36408528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 9877320 - 9877242
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcc 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||    
T  9877320 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttaggtctaatgtgcaaaaattatcaatcgagcc 9877242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 2729274 - 2729379
Alignment:
Q  12 tttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaa 111  Q
    ||||||||| ||||||||||||| | ||||||| |||| | ||||||| | ||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  2729274 tttctttttataagtgtgttaatgggcttttggattggatttaatgtgtaaaaattatcgatcgagcccgggcgtccgcccggggtcgccgggcggtgaa 2729373  T
Q  112 accgcc 117  Q
    ||||||    
T  2729374 accgcc 2729379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 3435369 - 3435285
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcg 85  Q
    |||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||| |||||||||||| ||||||||||    
T  3435369 ttgcccaaatttttctttttgtaagtgtgttaatgggtttttgggttgggtctaatgtgcaaaaattatcgatcaagcccgggcg 3435285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 29728453 - 29728553
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||| |||||||||   ||||||||||| |||||||||||| || ||||||||||||| |||||||||| ||||||||||    
T  29728453 ttgcccaaatttttctttttgtaaatgtgttaatgagcttttgggttgagtctaatgtgcaaaatttatcgatcgagcacgggcgaccgtccggggtcgc 29728552  T
Q  101 c 101  Q
    |    
T  29728553 c 29728553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 15838385 - 15838268
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    ||||||||||||||||||| |||| ||||||||| ||||||| ||||| || ||||||||| |||||||| |||||||||||| ||||||||||||||||    
T  15838385 ttgcccaaatttttctttt-gtaaatgtgttaatggactttttggttgagtttaatgtgcaaaaattatcaatcgagcccgggtgaccgcccggggtcgc 15838287  T
Q  101 cggacggtgaaaccgccac 119  Q
    |  |||||  |||||||||    
T  15838286 catacggtagaaccgccac 15838268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 39914614 - 39914516
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||| ||||| ||| |||||||||   ||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  39914614 ttgcccaaattttt-tttttataaatgtgttaatgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 39914516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 3648861 - 3648947
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgac 87  Q
    ||||||||| |||||||||||||| ||||||||| | ||||||||||| |||||||||| | |||||||||||||||||||||||||    
T  3648861 ttgcccaaaattttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgaaaaaattatcgatcgagcccgggcgac 3648947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 40470567 - 40470637
Alignment:
Q  8 aatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagc 78  Q
    ||||||| ||||| ||||||||||||| ||||||||  |||||||||||||||| ||||||||||||||||    
T  40470567 aatttttttttttataagtgtgttaatggacttttgatttgggtctaatgtgcaaaaattatcgatcgagc 40470637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 10397122 - 10397227
Alignment:
Q  16 tttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccg 115  Q
    ||||| ||| ||||||||| | |||||||||||   |||||||| | ||||||||||| ||||||||||||  |||||| |||||||| ||||| ||||     
T  10397122 tttttttaactgtgttaatcggcttttgggttgaacctaatgtgaagaaattatcgattgagcccgggcgagtgcccggagtcgccgggcggtgtaacca 10397221  T
Q  116 ccactg 121  Q
    ||||||    
T  10397222 ccactg 10397227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 42231037 - 42230971
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattat 69  Q
    ||||||||||||||||||||||||  |||||||| |||||||| ||||| | ||||||||| |||||||    
T  42231037 ttgcccaaatttttctttttgtaa--gtgttaatggacttttgagttggatttaatgtgcaaaaattat 42230971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 6e-48; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 17332618 - 17332739
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||    
T  17332618 ttgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgggtctaatatgcaaaaattatcgatcgagcccgggcgaacgcccggggtcgc 17332717  T
Q  101 cggacggtgaaaccgccactga 122  Q
    ||| ||||||||||||| ||||    
T  17332718 cgggcggtgaaaccgcccctga 17332739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 31501783 - 31501899
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||    
T  31501783 ttgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgggtctaatgtgcaaaaattatcgatcgagcccgggcaatcgcccggggtcgc 31501882  T
Q  101 cggacggtgaaaccgcc 117  Q
    ||| |||||||||||||    
T  31501883 cgggcggtgaaaccgcc 31501899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 31680467 - 31680351
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||    
T  31680467 ttgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgggtctaatgcggaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 31680368  T
Q  101 cggacggtgaaaccgcc 117  Q
    ||| |||||||||||||    
T  31680367 cgggcggtgaaaccgcc 31680351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 37254741 - 37254625
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||    
T  37254741 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcaaaaattatcgatcgagcctgggcgaccgcctggggtcgc 37254642  T
Q  101 cggacggtgaaaccgcc 117  Q
    ||  |||||||||||||    
T  37254641 cgagcggtgaaaccgcc 37254625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 12278927 - 12279043
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||    
T  12278927 ttgcccaaatttttctttttgtaagtgtgttaattggcctttgggttgggtctaatgtgcaaaaattatcgatcgagtccgggcgaccgcccgggatcgc 12279026  T
Q  101 cggacggtgaaaccgcc 117  Q
    ||| |||||||||||||    
T  12279027 cgggcggtgaaaccgcc 12279043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 13818077 - 13817977
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||| ||||||||| | ||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  13818077 ttgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgagcgaccgcccggggtcgc 13817978  T
Q  101 c 101  Q
    |    
T  13817977 c 13817977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 33430421 - 33430335
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgac 87  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  33430421 ttgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgggtctaatgcgcaaaaattatcgatcgagcccgggcgac 33430335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 10034027 - 10033927
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||| ||||||||| | ||||||||||| |||||||||||| |||||||||||||||||||||||| || ||||||||||    
T  10034027 ttgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgatcgtccggggtcgc 10033928  T
Q  101 c 101  Q
    |    
T  10033927 c 10033927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 1776443 - 1776565
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||| ||||||||| ||||||| |||||  | |||||| || |||||||||||||||||||||||||||||||||||||     
T  1776443 ttgcccaaatttttctttttgtaaatgtgttaatggactttttggttgactttaatgtacaaaaattatcgatcgagcccgggcgaccgcccggggtcgt 1776542  T
Q  101 cggacggtgaaaccgccactgaa 123  Q
    |  |||||  |||||||||||||    
T  1776543 catacggtagaaccgccactgaa 1776565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 26283385 - 26283501
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||| ||| |||||||||  |||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  26283385 ttgcccaaatttttctttttataaatgtgttaatgaactttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgaggtcgc 26283484  T
Q  101 cggacggtgaaaccgcc 117  Q
       |||||| |||||||    
T  26283485 tacacggtggaaccgcc 26283501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 39434796 - 39434696
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    ||||||||||||||| |||||||| ||||||||| | ||||||||||| |||||||||| | |||||||||||||||||||||||||||||| |||||||    
T  39434796 ttgcccaaatttttcattttgtaaatgtgttaatgggcttttgggttgagtctaatgtgaaaaaattatcgatcgagcccgggcgaccgcccagggtcgc 39434697  T
Q  101 c 101  Q
    |    
T  39434696 c 39434696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 36291471 - 36291355
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||| |||||||||  |||||| |||| | ||||||||||| ||||||| |||||| ||||| ||||||||||| ||||     
T  36291471 ttgcccaaatttttctttttgtaaatgtgttaatgaacttttaggttagatctaatgtgcaaaaattattgatcgaacccggacgaccgcccggagtcgg 36291372  T
Q  101 cggacggtgaaaccgcc 117  Q
    ||| |||||||||||||    
T  36291371 cgggcggtgaaaccgcc 36291355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 36293688 - 36293788
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||| ||||||||| | ||||||||||| ||||||||| || ||||||||||||||| |||| ||||||| |||||||||    
T  36293688 ttgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtacaaaaattatcgatcgagtccggacgaccgctcggggtcgc 36293787  T
Q  101 c 101  Q
    |    
T  36293788 c 36293788  T

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Target: chr5; HSP #14
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 43068977 - 43068896
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgg 82  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| | ||||||| ||||||||||||    
T  43068977 ttgcccaaatttttctttttgtaaatgtgttaatggacttttgggttgggtctaatgtgaaaaaattattgatcgagcccgg 43068896  T

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Target: chr5; HSP #15
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 4 - 88
Target Start/End: Complemental strand, 28801384 - 28801300
Alignment:
Q  4 cccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgacc 88  Q
    ||||||||||||||||||||||||||||||| | ||||||| |||| ||||||||||| ||||||||||||||||| ||||||||    
T  28801384 cccaaatttttctttttgtaagtgtgttaatgggcttttggtttggatctaatgtgcaaaaattatcgatcgagccagggcgacc 28801300  T

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Target: chr5; HSP #16
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 19986036 - 19985941
Alignment:
Q  4 cccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcg 99  Q
    ||||||||||||||||||||| |||| |||| |||||||||||||  ||||||||||| |||||||||||||||| ||| |||||||||| |||||    
T  19986036 cccaaatttttctttttgtaaatgtgctaatggacttttgggttgaatctaatgtgcaaaaattatcgatcgagctcggacgaccgcccgaggtcg 19985941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 5 - 101
Target Start/End: Original strand, 3155702 - 3155798
Alignment:
Q  5 ccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgcc 101  Q
    |||||||||||||||| ||| ||||||||| ||||||| ||||| ||| |||||||| ||||||| ||||||||||| ||||||||||||| |||||    
T  3155702 ccaaatttttctttttataaatgtgttaatggacttttaggttgagtcgaatgtgcaaaaattattgatcgagcccgagcgaccgcccgggatcgcc 3155798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 39657573 - 39657673
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||| |||||||||   ||||||||||| |||||||||||| |||||||| ||||||||||  |||||| | ||||||||    
T  39657573 ttgcccaaatttttctttttgtaaatgtgttaatgagcttttgggttgagtctaatgtgcaaaaattatcaatcgagcccgaacgaccgtctggggtcgc 39657672  T
Q  101 c 101  Q
    |    
T  39657673 c 39657673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 16155097 - 16155015
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccggg 83  Q
    ||||| |||||||||||||| ||| ||||||||| | ||||||||||| |||||||||||| |||||||||||||||||||||    
T  16155097 ttgcctaaatttttctttttataaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggg 16155015  T

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Target: chr5; HSP #20
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 202724 - 202623
Alignment:
Q  16 tttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccg 115  Q
    ||||||| ||||| ||||| | |||||||||| |  ||||||| ||||||||||||||||||||||||||||| ||  |||||| ||| |||||||||||    
T  202724 tttttgttagtgtcttaatgggcttttgggttcgacctaatgtacacaaattatcgatcgagcccgggcgaccacctagggtcgtcgggcggtgaaaccg 202625  T
Q  116 cc 117  Q
    ||    
T  202624 cc 202623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 16333943 - 16334013
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcg 71  Q
    |||||||||||||||||||||||| ||||||||| | |||||||||||  ||||||||||| |||||||||    
T  16333943 ttgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgaatctaatgtgcaaaaattatcg 16334013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 45 - 117
Target Start/End: Original strand, 26543876 - 26543948
Alignment:
Q  45 gttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgcc 117  Q
    |||||| ||||||||   ||||||  ||||||||||||||||||||||||||||||||| |||| ||||||||    
T  26543876 gttgggcctaatgtgaggaaattacggatcgagcccgggcgaccgcccggggtcgccgggcggtaaaaccgcc 26543948  T

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Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 34389123 - 34389239
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  34389123 ttgcccaaatttttctttttgtaagtgtgttaattagcttttgggttgggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 34389222  T
Q  101 cggacggtgaaaccgcc 117  Q
    ||| |||||||| ||||    
T  34389223 cgggcggtgaaatcgcc 34389239  T

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Target: chr7; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 37002211 - 37002327
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||  |||||||||||||||||    
T  37002211 ttgcccaaatttttctttttgtaagtgtgttaattgacttttggattgggtctaatgtgcaaaaattatcgatcgagaccgaacgaccgcccggggtcgc 37002310  T
Q  101 cggacggtgaaaccgcc 117  Q
    ||| |||||||||||||    
T  37002311 cgggcggtgaaaccgcc 37002327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 8867798 - 8867910
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||| ||| ||||||| ||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  8867798 ttgcccaaatttttctttttgtaaatgtattaattggcttttggattgggtctaatatgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 8867897  T
Q  101 cggacggtgaaac 113  Q
    ||| |||||||||    
T  8867898 cgggcggtgaaac 8867910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 33685664 - 33685548
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||| ||||||||||||||||||| ||||| ||| ||||||||    
T  33685664 ttgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgggtttaatgtgcaaaaattatcgatcgagcccgagcgactgcctggggtcgc 33685565  T
Q  101 cggacggtgaaaccgcc 117  Q
    ||| |||||||||||||    
T  33685564 cgggcggtgaaaccgcc 33685548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 26624846 - 26624729
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcg-atcgagcccgggcgaccgcccggggtcg 99  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||| ||||||||| ||||||||| |||||||||||||||| |    
T  26624846 ttgcccaaatttttctttttgtaagtgtgttaattaacttttggattgggtctaatatgcaaaaattatcgaatcgagcccaggcgaccgcccggggttg 26624747  T
Q  100 ccggacggtgaaaccgcc 117  Q
    |||| |||||||||||||    
T  26624746 ccgggcggtgaaaccgcc 26624729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 5555587 - 5555487
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||| || |||||| | ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5555587 ttgcccaaatttttctttttgtaaatgcgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 5555488  T
Q  101 c 101  Q
    |    
T  5555487 c 5555487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 8394225 - 8394105
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    ||||||||||||||| |||||||| ||||||||| ||||||| ||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8394225 ttgcccaaatttttccttttgtaaatgtgttaatggactttttggttgagtttaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 8394126  T
Q  101 cggacggtgaaaccgccactg 121  Q
    |  |||||  |||||||||||    
T  8394125 catacggtagaaccgccactg 8394105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 35090265 - 35090177
Alignment:
Q  4 cccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgccc 92  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  35090265 cccaaatttttctttttgtaagtgtgttaattggcttttgggttgggtctaatgtgcaaaaattattgatcgagcccgggcgaccgccc 35090177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 3114163 - 3114260
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtc 98  Q
    |||||||||||||||||||||||| ||||||||| | ||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  3114163 ttgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgtccggggtc 3114260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 36630916 - 36630799
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||| ||||||||| ||||||| ||||| || ||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  36630916 ttgcccaaatttttctttttgtaaatgtgttaatggactttttggttgagtttaatgtgcaaaaattatcgatcgagcccgggcgaccgtccggggtcgc 36630817  T
Q  101 cggacggtgaaaccgcca 118  Q
    |  |||||  ||||||||    
T  36630816 catacggtagaaccgcca 36630799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 14777174 - 14777273
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||| |||||||||   ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  14777174 ttgcccaaatttttctttttgtaaatgtgttaatgagcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgc 14777273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 5 - 122
Target Start/End: Complemental strand, 7002821 - 7002704
Alignment:
Q  5 ccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgccgga 104  Q
    |||||||||| |||||||| |||||||||||| |||||||||||||| ||||||  | ||||  |||||||||||||||||||||| ||||||||||||     
T  7002821 ccaaatttttatttttgtatgtgtgttaattggcttttgggttgggtgtaatgtagaaaaatcgtcgatcgagcccgggcgaccgctcggggtcgccggg 7002722  T
Q  105 cggtgaaaccgccactga 122  Q
    ||||||||||||| ||||    
T  7002721 cggtgaaaccgcccctga 7002704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 5 - 122
Target Start/End: Complemental strand, 7048692 - 7048575
Alignment:
Q  5 ccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgccgga 104  Q
    |||||||||| |||||||| |||||||||||| |||||||||||||| ||||||  | ||||  |||||||||||||||||||||| ||||||||||||     
T  7048692 ccaaatttttatttttgtatgtgtgttaattggcttttgggttgggtgtaatgtagaaaaatcgtcgatcgagcccgggcgaccgctcggggtcgccggg 7048593  T
Q  105 cggtgaaaccgccactga 122  Q
    ||||||||||||| ||||    
T  7048592 cggtgaaaccgcccctga 7048575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 43184535 - 43184651
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||  |||| ||| | | ||||||||||||||||||| ||||||||||||  ||||    
T  43184535 ttgcccaaatttttctttttgtaagtatgttaattggcttttgggttaagtctgatgcgtaaaaattatcgatcgagcccgagcgaccgcccggaatcgc 43184634  T
Q  101 cggacggtgaaaccgcc 117  Q
    ||| |||||||||||||    
T  43184635 cgggcggtgaaaccgcc 43184651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 38638303 - 38638380
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagc 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||    
T  38638303 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttggatctaatgtgcaaaaattatcaatcgagc 38638380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 40920074 - 40920151
Alignment:
Q  5 ccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgg 82  Q
    |||||||||||||||||||| ||||||||||| ||||||||||   ||||||||||| ||||||||||||||||||||    
T  40920074 ccaaatttttctttttgtaaatgtgttaattggcttttgggttaaatctaatgtgcaaaaattatcgatcgagcccgg 40920151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 36658281 - 36658199
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccggg 83  Q
    |||||||||||||| ||||||| ||| ||||||||| ||||| ||||||||| |||||||| ||||||||||||||| |||||    
T  36658281 ttgcccaaatttttatttttgttagtatgttaattggcttttcggttgggtccaatgtgcaaaaattatcgatcgagtccggg 36658199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 26502899 - 26502789
Alignment:
Q  11 ttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgccggacggtga 110  Q
    |||| |||||||| |||||||||| | |||||||||||||  |||| |||| |||   ||||||||||||||||||| ||| |||||||||  ||||||     
T  26502899 ttttttttttgta-gtgtgttaatgggcttttgggttgggcttaatatgcaaaaaaattcgatcgagcccgggcgactgcctggggtcgccacacggtgg 26502801  T
Q  111 aaccgccactga 122  Q
    |||| |||||||    
T  26502800 aaccaccactga 26502789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 26589815 - 26589925
Alignment:
Q  11 ttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgccggacggtga 110  Q
    |||| |||||||| |||||||||| | |||||||||||||  |||| |||| |||   ||||||||||||||||||| ||| |||||||||  ||||||     
T  26589815 ttttttttttgta-gtgtgttaatgggcttttgggttgggcttaatatgcaaaaaaattcgatcgagcccgggcgactgcctggggtcgccacacggtgg 26589913  T
Q  111 aaccgccactga 122  Q
    |||| |||||||    
T  26589914 aaccaccactga 26589925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 65 - 122
Target Start/End: Original strand, 37966614 - 37966671
Alignment:
Q  65 attatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccactga 122  Q
    |||||||||||||| ||| |||||||| | ||||||||| ||||||||||||| ||||    
T  37966614 attatcgatcgagctcggacgaccgcctgaggtcgccgggcggtgaaaccgcctctga 37966671  T

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Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 103
Target Start/End: Original strand, 10876829 - 10876876
Alignment:
Q  56 tgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgccgg 103  Q
    |||||| |||||||||||||||||||||||||| | |||| |||||||    
T  10876829 tgtgcaaaaattatcgatcgagcccgggcgaccacacgggttcgccgg 10876876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 10868542 - 10868575
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaat 34  Q
    |||||||||||||||||||||||| |||||||||    
T  10868542 ttgcccaaatttttctttttgtaaatgtgttaat 10868575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 4 - 117
Target Start/End: Complemental strand, 35907649 - 35907536
Alignment:
Q  4 cccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgccgg 103  Q
    |||||| ||||||||||||||||||  |||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||    
T  35907649 cccaaaattttctttttgtaagtgtactaattggcttttgggttgggtctaatgtgcaaaaattatcgatcaagcccgggcgaccgcccgaggtcgccgg 35907550  T
Q  104 acggtgaaaccgcc 117  Q
     |||||||||||||    
T  35907549 gcggtgaaaccgcc 35907536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 17445413 - 17445297
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||| |||| |||||||||||||||  ||||||||    
T  17445413 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttggatctaatgtacaaaaattattgatccagcccgggcgaccgcatggggtcgc 17445314  T
Q  101 cggacggtgaaaccgcc 117  Q
    ||| |  ||||||||||    
T  17445313 cgggcaatgaaaccgcc 17445297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 3829084 - 3828968
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||| |||||||||||||| |||| ||||||| ||||||| ||    
T  3829084 ttgcccaaatttttctttttgtaagtgtgttaatgaacttttgggttgggtttaatgtgcaaaaattatcgatcgaacccgagcgaccgtccggggttgc 3828985  T
Q  101 cggacggtgaaaccgcc 117  Q
    |||  | ||||||||||    
T  3828984 cgggtgatgaaaccgcc 3828968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 5 - 117
Target Start/End: Original strand, 41972346 - 41972457
Alignment:
Q  5 ccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgccgga 104  Q
    |||||||||||||||||||||||||||||| | ||||| |||||| ||||||||||| ||||||||||||||| || ||||||||||||||||||| |||    
T  41972346 ccaaatttttctttttgtaagtgtgttaataggcttttaggttggatctaatgtgcaaaaattatcgatcgag-ccaggcgaccgcccggggtcgctgga 41972444  T
Q  105 cggtgaaaccgcc 117  Q
    ||||| |||||||    
T  41972445 cggtggaaccgcc 41972457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 321444 - 321560
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||  || |||||||||||||||||||| ||||||||||   ||||    
T  321444 ttgcccaaatttttctttttgtaactgtgttaatggacttttgggttggatctaatgcacaaaaattatcgatcgagcccggacgaccgcccgaaatcgc 321543  T
Q  101 cggacggtgaaaccgcc 117  Q
    |||  ||||||||||||    
T  321544 cgggtggtgaaaccgcc 321560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 26144355 - 26144239
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||| ||| |||||||||   ||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26144355 ttgcccaaatttttctttttataaatgtgttaatgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 26144256  T
Q  101 cggacggtgaaaccgcc 117  Q
       |||||| |||||||    
T  26144255 tacacggtggaaccgcc 26144239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 7433545 - 7433449
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggt 97  Q
    ||||||||| |||||||||||||| ||||||||| | ||||||||||| |||||||||||| ||||||| |||||||| ||||||||||||||||||    
T  7433545 ttgcccaaaattttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatagatcgagctcgggcgaccgcccggggt 7433449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 5 - 101
Target Start/End: Original strand, 32982127 - 32982223
Alignment:
Q  5 ccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgcc 101  Q
    |||||||||||||||||||| | ||||||| | ||||| |||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||    
T  32982127 ccaaatttttctttttgtaaatatgttaatgggcttttaggttgggtctaatgtgcaaaaattatcgatcgggcccgcgcgaccgcccggggtcgcc 32982223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 42311008 - 42311108
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||| ||||||||  | ||||||||||| |||||||||||| |||||||||||||||||||||||| || | ||||||||    
T  42311008 ttgcccaaatttttctttttgtaaatgtgttaacgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgatcgtctggggtcgc 42311107  T
Q  101 c 101  Q
    |    
T  42311108 c 42311108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 23313339 - 23313246
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgc-acaaattatcgatcgagcccgggcgaccgcccg 93  Q
    |||||||||||||||||||||||| |||||||||  ||||||  |||| ||||||||||| |||||| ||| ||||||||||||| ||||||||    
T  23313339 ttgcccaaatttttctttttgtaaatgtgttaatgaacttttatgttgagtctaatgtgcaacaaatcatcaatcgagcccgggcaaccgcccg 23313246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 33489787 - 33489671
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||| |||||||||||||| |||||||||||||| | ||||| | ||| ||||||||| || |||||||||| | | ||||  |||||| ||||||||||    
T  33489787 ttgctcaaatttttcttttagtaagtgtgttaatgggcttttagtttgagtctaatgtacaaaaattatcgaacaatcccgaacgaccgtccggggtcgc 33489688  T
Q  101 cggacggtgaaaccgcc 117  Q
    |||  ||||||||||||    
T  33489687 cgggtggtgaaaccgcc 33489671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 44352614 - 44352666
Alignment:
Q  65 attatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgcc 117  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  44352614 attatcgatcgagcccgggcgacctcccggggtcgccggatggtgaaaccgcc 44352666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 31867014 - 31866961
Alignment:
Q  64 aattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgcc 117  Q
    |||||||| |||| |||||||||||||||||||||||||| |||||||||||||    
T  31867014 aattatcggtcgaacccgggcgaccgcccggggtcgccgggcggtgaaaccgcc 31866961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 38 - 122
Target Start/End: Original strand, 48901209 - 48901292
Alignment:
Q  38 cttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccactga 122  Q
    ||||||||||||| |||||||||| |||||||||||||| ||| ||| ||||||||| || ||||| ||||| ||||||| ||||    
T  48901209 cttttgggttgggcctaatgtgcataaattatcgatcga-ccccggccaccgcccggagttgccgggcggtggaaccgcccctga 48901292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 35951427 - 35951493
Alignment:
Q  16 tttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgg 82  Q
    ||||||| ||||||||||| | || ||||||| |  ||||||| || ||||||||||||||||||||    
T  35951427 tttttgttagtgtgttaatgggctattgggttcgacctaatgtacaaaaattatcgatcgagcccgg 35951493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 81; Significance: 8e-38; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 5 - 117
Target Start/End: Complemental strand, 31576 - 31464
Alignment:
Q  5 ccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgccgga 104  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||| |||||| ||||||||||||||||||||||||||| | |||||||||||     
T  31576 ccaaatttttctttttgtaagtgtgttaatgggcttttgggttgggtctagtgtgcaaaaattatcgatcgagcccgggcgaccgtctggggtcgccggg 31477  T
Q  105 cggtgaaaccgcc 117  Q
    || ||||||||||    
T  31476 cgatgaaaccgcc 31464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 5330 - 5230
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    ||||||||| |||||||||||||||||||||||||| ||||| | |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  5330 ttgcccaaaattttctttttgtaagtgtgttaattggcttttagattgggtctaatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgc 5231  T
Q  101 c 101  Q
    |    
T  5230 c 5230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 17942 - 17842
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||||||| ||||||||| | ||||||||||| |||||||||||| |||||||||||||||||||| ||| ||| |||||||||    
T  17942 ttgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacgatcgctcggggtcgc 17843  T
Q  101 c 101  Q
    |    
T  17842 c 17842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 480524 - 480640
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||| ||| |||||||||   ||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  480524 ttgcccaaatttttctttttataaatgtgttaatgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 480623  T
Q  101 cggacggtgaaaccgcc 117  Q
       |||||| |||||||    
T  480624 tacacggtggaaccgcc 480640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2142 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 622 - 506
Alignment:
Q  1 ttgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgc 100  Q
    |||||||||||||||||||| ||| |||||||||   ||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  622 ttgcccaaatttttctttttataaatgtgttaatgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgc 523  T
Q  101 cggacggtgaaaccgcc 117  Q
       |||||| |||||||    
T  522 tacacggtggaaccgcc 506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 53021 - 52944
Alignment:
Q  5 ccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtctaatgtgcacaaattatcgatcgagcccgg 82  Q
    |||||||||||||||||||| ||||||||||| ||||||||||   ||||||||||| ||||||||||||||||||||    
T  53021 ccaaatttttctttttgtaaatgtgttaattggcttttgggttaaatctaatgtgcaaaaattatcgatcgagcccgg 52944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0769 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 45 - 117
Target Start/End: Complemental strand, 1333 - 1261
Alignment:
Q  45 gttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgcc 117  Q
    |||||| ||||||||   ||||||  ||||||||||||||||||||||||||||||||| |||| ||||||||    
T  1333 gttgggcctaatgtgaggaaattacggatcgagcccgggcgaccgcccggggtcgccgggcggtaaaaccgcc 1261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 194085 - 194021
Alignment:
Q  44 ggttgggtctaatgtgcacaaattatcgatcgagcccgggcgaccgcccggggtcgccggacggt 108  Q
    ||||||| ||||||||   ||||||  ||||||||||||||||||||||||||||||||| ||||    
T  194085 ggttgggcctaatgtgaggaaattacggatcgagcccgggcgaccgcccggggtcgccgggcggt 194021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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