View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15577_low_4 (Length: 476)
Name: NF15577_low_4
Description: NF15577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15577_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 21 - 407
Target Start/End: Original strand, 42425719 - 42426105
Alignment:
| Q |
21 |
taaatatgcggattgaatatttaaaaacactgtttcataggctaaacannnnnnnnnactaactgctcaactaatgtatactagtatgctaatttgattt |
120 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42425719 |
taaatatgtggattgaatatttaaaaacactgtttcataggctaaacatttttttttactaactgctcaactaatgtatactagtatgctaatttgattt |
42425818 |
T |
|
| Q |
121 |
agaatgtaatttgtatacggtaatacacatatatcccaaatgcattttttccctccgtagtcatttacatttaagataataatcttattttagacaatgt |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
42425819 |
agaatgtaatttgtatacggtaatacacatatatcccaaatgcattttttccctccgtagtcatctacatttaagataataatcttattttagacaatgt |
42425918 |
T |
|
| Q |
221 |
taaacactaaatgcgaacaactcttttaaatgatatttgaatattagtttattatgtttgtgaaaactaactcatttcgttagaccaagcactaattggt |
320 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42425919 |
taaacactaaatgtgaacaactcttttaaatgatatttgaatattagttttttatgtttgtgaaaactaactcatttcgttagaccaagcactaattggt |
42426018 |
T |
|
| Q |
321 |
ataatatccgaatacattttattattttgacatctgtatacatatttttaaaaataataggagtattataacatataggagaatgct |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42426019 |
ataatatccgaatacattttattattttgacatttgtatagatatttttaaaaataataggagtattataacatataggagaatgct |
42426105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University