View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15577_low_5 (Length: 460)

Name: NF15577_low_5
Description: NF15577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15577_low_5
NF15577_low_5
[»] chr2 (7 HSPs)
chr2 (1-460)||(39555763-39556222)
chr2 (261-320)||(8513954-8514013)
chr2 (151-204)||(13387406-13387459)
chr2 (259-327)||(38807405-38807474)
chr2 (249-300)||(6620026-6620078)
chr2 (155-191)||(8513954-8513990)
chr2 (243-322)||(13387318-13387398)
[»] chr5 (6 HSPs)
chr5 (151-322)||(37442504-37442674)
chr5 (149-324)||(9828179-9828354)
chr5 (234-301)||(42158252-42158319)
chr5 (234-324)||(32303607-32303698)
chr5 (236-327)||(32827055-32827146)
chr5 (234-324)||(15398333-15398423)
[»] chr7 (4 HSPs)
chr7 (150-322)||(3756376-3756550)
chr7 (154-327)||(41909257-41909431)
chr7 (249-324)||(33818947-33819023)
chr7 (151-239)||(21455372-21455460)
[»] chr1 (5 HSPs)
chr1 (160-326)||(622845-623013)
chr1 (262-325)||(14210602-14210664)
chr1 (243-318)||(32827729-32827805)
chr1 (151-192)||(3851815-3851856)
chr1 (151-187)||(32815751-32815787)
[»] chr8 (3 HSPs)
chr8 (148-324)||(12750154-12750332)
chr8 (261-322)||(33102110-33102172)
chr8 (261-324)||(22842147-22842211)
[»] chr6 (8 HSPs)
chr6 (261-325)||(23252895-23252960)
chr6 (261-327)||(30841103-30841169)
chr6 (234-327)||(2146726-2146819)
chr6 (154-325)||(28992363-28992536)
chr6 (192-322)||(3606986-3607117)
chr6 (151-204)||(30841226-30841279)
chr6 (261-318)||(2725849-2725907)
chr6 (168-204)||(3764594-3764630)
[»] chr4 (6 HSPs)
chr4 (249-313)||(1845833-1845898)
chr4 (151-320)||(36138937-36139107)
chr4 (152-222)||(959152-959222)
chr4 (243-324)||(959081-959162)
chr4 (261-300)||(33648222-33648262)
chr4 (261-324)||(52450178-52450242)
[»] chr3 (5 HSPs)
chr3 (243-333)||(33486907-33486997)
chr3 (151-212)||(36703028-36703089)
chr3 (281-324)||(18360163-18360206)
chr3 (160-224)||(9144172-9144237)
chr3 (262-313)||(20991562-20991614)
[»] scaffold0254 (1 HSPs)
scaffold0254 (234-327)||(23187-23280)


Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Original strand, 39555763 - 39556222
Alignment:
Q  1 tctcttttccaatgaatggtgaagattttagtggatcctcatgcatgtcacatgagagaatccatctccgttttaattgttcaaacatcacacctcttta 100  Q
    |||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||    
T  39555763 tctctttttcaatgaatggtgaagattttagtggactctcatgcatgtcacatgagagaattcatctccattttaattgtttaaacatcacacctcttta 39555862  T
Q  101 gtgatttactaatatatataaaataagttttctcttaaacatatgaaaaagagaattgttcttctcacatctgtttttgttcattcctgtcctacatgag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  39555863 gtgatttactaatatatataaaataagttttctcttaaacataagaaaaagagaattgttcttctcacatctgtttttgttcattcatgtcctacgtgag 39555962  T
Q  201 ttaatttacgctaaaaatacacttacgcgggtcaactcaccttgaaattacacatgcataagttaactcacactcgactatttgacgggaatgagcaaaa 300  Q
    |||| ||||||||||||||||| |||| | |||||||||| || ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  39555963 ttaacttacgctaaaaatacacctacgtgagtcaactcactttaaaattacacatgcgtgagttaactcacactcgactatttgacgggaatgagcaaaa 39556062  T
Q  301 tcagataggagaaaagcaattatcaaagaaaaagaggaagagaaagcactatgatggcccataaaattaatgtctactcattagcccaatgacatgatct 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39556063 tcagataggagaaaagcaattatcaaagaaaaagaggaagagaaagcactatgatggcccataaaattaatgtctactcattagcccaatgacatgatct 39556162  T
Q  401 ccatctatgcctccacttcactccacactctcctctattcgtttcacctttcacctccct 460  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39556163 ccatctatgcctccacttcactccacactctcctctattcgtttcacctttcacctccct 39556222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 261 - 320
Target Start/End: Complemental strand, 8514013 - 8513954
Alignment:
Q  261 agttaactcacactcgactatttgacgggaatgagcaaaatcagataggagaaaagcaat 320  Q
    ||||||||||||||||| |||||||| ||||||| ||||| ||||| |||||| ||||||    
T  8514013 agttaactcacactcgattatttgacaggaatgaacaaaaacagatgggagaagagcaat 8513954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 13387459 - 13387406
Alignment:
Q  151 gagaattgttcttctcacatctgtttttgttcattcctgtcctacatgagttaa 204  Q
    |||||||||||||||| ||||| |||||||||||||  ||||||| ||||||||    
T  13387459 gagaattgttcttctctcatctatttttgttcattctcgtcctacgtgagttaa 13387406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 327
Target Start/End: Original strand, 38807405 - 38807474
Alignment:
Q  259 taagttaactcacactcgacta-tttgacgggaatgagcaaaatcagataggagaaaagcaattatcaaa 327  Q
    |||||||||||||||||||||| ||||| ||| ||||  |||  ||||| | ||||||||||||||||||    
T  38807405 taagttaactcacactcgactactttgatggggatgaataaatacagatggaagaaaagcaattatcaaa 38807474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 300
Target Start/End: Complemental strand, 6620078 - 6620026
Alignment:
Q  249 tacacatgcataagttaactcacactcgactattt-gacgggaatgagcaaaa 300  Q
    ||||| ||||| ||||||||||| ||| ||||||| |||||||||||||||||    
T  6620078 tacacctgcatgagttaactcacgctcaactattttgacgggaatgagcaaaa 6620026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 191
Target Start/End: Original strand, 8513954 - 8513990
Alignment:
Q  155 attgttcttctcacatctgtttttgttcattcctgtc 191  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  8513954 attgctcttctcccatctgtttttgttcattcctgtc 8513990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 322
Target Start/End: Complemental strand, 13387398 - 13387318
Alignment:
Q  243 tgaaattacacatgcataagttaactcacactcgactattt-gacgggaatgagcaaaatcagataggagaaaagcaatta 322  Q
    ||||| ||||||| | | ||||||||||| || |||||||| |||||||||||  |||| ||||| |||||||| ||||||    
T  13387398 tgaaaatacacatacgtgagttaactcacgcttgactattttgacgggaatgaagaaaaacagatgggagaaaaacaatta 13387318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 9e-34; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 151 - 322
Target Start/End: Original strand, 37442504 - 37442674
Alignment:
Q  151 gagaattgttcttctcacatctgtttttgttcattcctgtcctacatgagttaatttacgct-aaaaatacacttacgcgggtcaactcaccttgaaatt 249  Q
    |||||||||||||||||  |||||||||| ||||||| |||||||||||||||| | ||||| |||||||||| |||| | || ||||||  |||||| |    
T  37442504 gagaattgttcttctca--tctgtttttgctcattcccgtcctacatgagttaactcacgctgaaaaatacacctacgtgagttaactcatgttgaaaat 37442601  T
Q  250 acacatgcataagttaactcacactcgactatttgacgggaatgagcaaaatcagataggagaaaagcaatta 322  Q
    |||  ||||| ||||||||||| |||| ||||||||||||||||||||||| ||||| | |||| ||||||||    
T  37442602 acatctgcatgagttaactcacgctcggctatttgacgggaatgagcaaaaacagatggaagaagagcaatta 37442674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 149 - 324
Target Start/End: Complemental strand, 9828354 - 9828179
Alignment:
Q  149 aagagaattgttcttctcacatctgtttttgttcattcctgtcctacatgagttaatttacgct-aaaaatacacttacgcgggtcaactcaccttgaaa 247  Q
    ||||||||||||||||||  ||| ||||||| ||||| | |  |||| ||| |||| | ||||| |||||||||| |||| | || |||||| || ||||    
T  9828354 aagagaattgttcttctcctatcagtttttgctcatttccgctctacgtgatttaactcacgctgaaaaatacacctacgtgagttaactcatct-gaaa 9828256  T
Q  248 ttacacatgcataagttaactcacactcgactatttgacgggaatgagcaaaatcagataggagaaaagcaattatc 324  Q
     ||||| ||  |  |||||||||| ||| |||||||||||||||||||||||| ||||| |||||| ||||||||||    
T  9828255 atacacttgtgtgggttaactcacgctctactatttgacgggaatgagcaaaaccagatgggagaagagcaattatc 9828179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 234 - 301
Target Start/End: Complemental strand, 42158319 - 42158252
Alignment:
Q  234 aactcaccttgaaattacacatgcataagttaactcacactcgactatttgacgggaatgagcaaaat 301  Q
    ||||||| || ||| ||||||||||| || |||||||||||||||||||||||| |||||||||||||    
T  42158319 aactcacattaaaaatacacatgcatgagataactcacactcgactatttgacgagaatgagcaaaat 42158252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 234 - 324
Target Start/End: Complemental strand, 32303698 - 32303607
Alignment:
Q  234 aactcaccttgaaattacacatgcataagttaactcacactcgacta-tttgacgggaatgagcaaaatcagataggagaaaagcaattatc 324  Q
    |||||||  ||||| ||||||||| | ||||||||||| |||||||| |||||||  ||||||||||||||||| | |||| ||||||||||    
T  32303698 aactcacgctgaaaatacacatgcgtgagttaactcacgctcgactattttgacgaaaatgagcaaaatcagatggaagaagagcaattatc 32303607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 327
Target Start/End: Original strand, 32827055 - 32827146
Alignment:
Q  236 ctcaccttgaaattacacatgcataagttaactcacactcgactatttgacgggaatgagcaaaatcagataggagaaaagcaattatcaaa 327  Q
    ||||| |||||| ||||| ||  | ||||||||||   ||||||||||||||| |||||||||||  ||||||||||| |||||||||||||    
T  32827055 ctcacgttgaaaatacacttgtgtgagttaactcatgttcgactatttgacggaaatgagcaaaaatagataggagaatagcaattatcaaa 32827146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 324
Target Start/End: Original strand, 15398333 - 15398423
Alignment:
Q  234 aactcaccttgaaattacacatgcataagttaactcacactcgactatttgacgggaatgagcaaaatcagataggagaaaagcaattatc 324  Q
    |||||| ||||||| ||||| ||||| |||| | |||  ||||| |||||||||| |||||||||||  |||| |||||| ||||||||||    
T  15398333 aactcatcttgaaaatacacctgcatgagttcattcatgctcgattatttgacggtaatgagcaaaaatagatgggagaagagcaattatc 15398423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 150 - 322
Target Start/End: Complemental strand, 3756550 - 3756376
Alignment:
Q  150 agagaattgttcttctcacatctgtttttgttcattcctgtcctacatgagttaatttacgctaa-aaatacacttacgcgggtcaactcaccttgaaat 248  Q
    ||||||||| ||||||| || ||||||||| |||||||||  |||| || | ||| | ||||||| |||||||| |||  | || |||||||  ||| |     
T  3756550 agagaattgctcttctcccacctgtttttgctcattcctgctctacgtgtgctaactcacgctaagaaatacacctacatgagttaactcacgctgagaa 3756451  T
Q  249 tacacatgcataagttaactcacactcgactattt-gacgggaatgagcaaaatcagataggagaaaagcaatta 322  Q
    | ||| ||||  ||||||||||||||||||||||| ||||||||||||||||| || || |||||| ||||||||    
T  3756450 tccacttgcacgagttaactcacactcgactattttgacgggaatgagcaaaaacaaatgggagaagagcaatta 3756376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 154 - 327
Target Start/End: Original strand, 41909257 - 41909431
Alignment:
Q  154 aattgttcttctcacatctgtttttgttcattcctgtcctacatgagttaatttacgct-aaaaatacacttacgcgggtcaactcaccttgaaattaca 252  Q
    ||||| ||||||| ||| |||||||||| |||||||| |||| || |||||  || ||| ||||||| |||| || | || |||| || |||||| || |    
T  41909257 aattgctcttctcccatttgtttttgtttattcctgtactacgtgggttaacctatgctgaaaaatatacttgcgtgagttaacttacgttgaaaatata 41909356  T
Q  253 catgcataagttaactcacactcgactatttgacgggaatgagcaaaatcagataggagaaaagcaattatcaaa 327  Q
    ||||| | |||||||| || || || ||||||||||||||||| |||| |||||  ||||| |||||||| ||||    
T  41909357 catgcgtgagttaacttacgcttgattatttgacgggaatgagaaaaaacagatgagagaagagcaattaccaaa 41909431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 324
Target Start/End: Original strand, 33818947 - 33819023
Alignment:
Q  249 tacacatgcataagttaactcacactcgacta-tttgacgggaatgagcaaaatcagataggagaaaagcaattatc 324  Q
    ||||||||||| |||||||||||  ||| ||| ||||||||| |||||||||| ||||| | |||||||||||||||    
T  33818947 tacacatgcatgagttaactcacgttcgcctactttgacggggatgagcaaaaacagatggaagaaaagcaattatc 33819023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 239
Target Start/End: Complemental strand, 21455460 - 21455372
Alignment:
Q  151 gagaattgttcttctcacatctgtttttgttcattcctgtcctacatgagttaatttacgctaaaaatacacttacgcgggtcaactca 239  Q
    ||||||||  |||||| |||||||||||| ||||| || || ||| ||  |||| | ||||||||||||||| |||| |||| ||||||    
T  21455460 gagaattgaccttctctcatctgtttttgctcatttctatcttacgtggattaactcacgctaaaaatacacatacgtgggttaactca 21455372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 160 - 326
Target Start/End: Original strand, 622845 - 623013
Alignment:
Q  160 tcttctcacatctgtttttgttcattcctgtcctacatgagttaatttacgct-aaaaatacacttacgcgggtcaactcaccttgaaattacacatgca 258  Q
    ||||||| ||| |||||||| ||||||| ||||||| |||||||| | ||| | |||||||||| |||| | || |||||||  ||||| |||||||||     
T  622845 tcttctcccatttgtttttgctcattcccgtcctacgtgagttaactcacgttgaaaaatacacctacgtgagttaactcacgctgaaaatacacatgcg 622944  T
Q  259 taagttaactcacactcgactattt-gacgggaatgagcaaaatcagataggagaaaagcaattatcaa 326  Q
      ||||||||||  |||  |||||| |||||| || ||||||| ||||| |||||| ||||||||||||    
T  622945 cgagttaactcaggctcagctattttgacggggataagcaaaaacagatgggagaatagcaattatcaa 623013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 262 - 325
Target Start/End: Complemental strand, 14210664 - 14210602
Alignment:
Q  262 gttaactcacactcgactatttgacgggaatgagcaaaatcagataggagaaaagcaattatca 325  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||| | |||||||||    
T  14210664 gttaactcacactcgactatttgacgggaatgagcaaaat-agatgggagaagatcaattatca 14210602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 318
Target Start/End: Complemental strand, 32827805 - 32827729
Alignment:
Q  243 tgaaattacacatgcataagttaactcacactcgactattt-gacgggaatgagcaaaatcagataggagaaaagca 318  Q
    ||||| ||||||||||| |||||||  ||||||| |||||| ||| ||||||||||||| ||||| |||||| ||||    
T  32827805 tgaaaatacacatgcatgagttaacctacactcggctattttgacaggaatgagcaaaaacagatgggagaagagca 32827729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 3851856 - 3851815
Alignment:
Q  151 gagaattgttcttctcacatctgtttttgttcattcctgtcc 192  Q
    |||||||| ||||||| |||||||||||| ||||||||||||    
T  3851856 gagaattgctcttctctcatctgtttttgctcattcctgtcc 3851815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 32815751 - 32815787
Alignment:
Q  151 gagaattgttcttctcacatctgtttttgttcattcc 187  Q
    |||||||||||||||| |||||||||||| |||||||    
T  32815751 gagaattgttcttctcccatctgtttttggtcattcc 32815787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 148 - 324
Target Start/End: Complemental strand, 12750332 - 12750154
Alignment:
Q  148 aaagagaattgttcttctcacatctgtttttgttcattcctgtcctacatgagttaatttacgct-aaaaatacacttacgcgggtcaactcaccttgaa 246  Q
    ||||||||||| ||||||| |||||||||||| |||||||   ||||| |||||||| | | ||| |||||||| ||||||   || || || |  ||||    
T  12750332 aaagagaattgctcttctcccatctgtttttgctcattcccaccctacgtgagttaactcaagctgaaaaatacgcttacgtaagttaattcgcactgaa 12750233  T
Q  247 attacacatgcataagttaactcacactcgactattt-gacgggaatgagcaaaatcagataggagaaaagcaattatc 324  Q
    | ||||| ||| | ||||||||||| |||| |||||| |||||| ||||| |||| ||||| |||||| ||||||||||    
T  12750232 aatacacctgcgtgagttaactcacgctcggctatttggacggggatgaggaaaaacagatgggagaagagcaattatc 12750154  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 322
Target Start/End: Original strand, 33102110 - 33102172
Alignment:
Q  261 agttaactcacactcgactattt-gacgggaatgagcaaaatcagataggagaaaagcaatta 322  Q
    ||||||||||| |||| |||||| ||||||||||||||||| |||||| ||||| ||||||||    
T  33102110 agttaactcacgctcggctattttgacgggaatgagcaaaaacagataagagaagagcaatta 33102172  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 324
Target Start/End: Complemental strand, 22842211 - 22842147
Alignment:
Q  261 agttaactcacactcgactattt-gacgggaatgagcaaaatcagataggagaaaagcaattatc 324  Q
    ||||||||||| ||||||||||| |||||||||||| |||| ||||| |||||| | ||||||||    
T  22842211 agttaactcacgctcgactattttgacgggaatgagaaaaaacagatgggagaagaacaattatc 22842147  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 261 - 325
Target Start/End: Original strand, 23252895 - 23252960
Alignment:
Q  261 agttaactcacactcgactattt-gacgggaatgagcaaaatcagataggagaaaagcaattatca 325  Q
    ||||||||||| |||| |||||| ||||||||||||||||| ||||| ||||||||||||||||||    
T  23252895 agttaactcacgctcggctattttgacgggaatgagcaaaaccagatgggagaaaagcaattatca 23252960  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 261 - 327
Target Start/End: Complemental strand, 30841169 - 30841103
Alignment:
Q  261 agttaactcacactcgactatttgacgggaatgagcaaaatcagataggagaaaagcaattatcaaa 327  Q
    ||||| |||||||||||||||||||||| |||||| |||| |||||||||||| | || ||||||||    
T  30841169 agttagctcacactcgactatttgacggaaatgagtaaaaacagataggagaagaacagttatcaaa 30841103  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 327
Target Start/End: Complemental strand, 2146819 - 2146726
Alignment:
Q  234 aactcaccttgaaattacacatgcataagttaactcacactcgactatttgacgggaatgagcaaaatcagataggagaaaagcaattatcaaa 327  Q
    ||||||| |||||||||||||||| | |||| |||||| |||  ||||||||||| ||| |||||||  |||| |||||| |||||||| ||||    
T  2146819 aactcacgttgaaattacacatgcgtgagttcactcacgctctgctatttgacggaaataagcaaaaatagatgggagaagagcaattaccaaa 2146726  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 154 - 325
Target Start/End: Original strand, 28992363 - 28992536
Alignment:
Q  154 aattgttcttctcacatctgtttttgttcattcctgtcctacatgagttaatttacgct-aaaaatacacttacgcgggtcaactcaccttgaaattaca 252  Q
    ||||| ||||||| |||||||||||  |||||||    |||| |||||||| | ||||| |||||||||| |||| | || |||||||  ||||| ||||    
T  28992363 aattgctcttctcccatctgtttttactcattccctctctacgtgagttaactcacgctgaaaaatacacatacgtgagttaactcacgctgaaaataca 28992462  T
Q  253 catgcataagttaactcacactcgactatttga-cgggaatgagcaaaatcagataggagaaaagcaattatca 325  Q
    ||||  | |||||| ||||  ||| |||||| | ||||||||||||||| ||||| |||||| || ||||||||    
T  28992463 catgtgtgagttaaatcacgatcgtctattttaacgggaatgagcaaaaccagatgggagaagagaaattatca 28992536  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 192 - 322
Target Start/End: Original strand, 3606986 - 3607117
Alignment:
Q  192 ctacatgagttaatttacgcta-aaaatacacttacgcgggtcaactcaccttgaaattacacatgcataagttaactcacactcgactatttgacggga 290  Q
    ||||||||||||| |||||||  ||||||||| |||| | || ||||||| || ||| ||||||||| | ||| || |||| ||| ||||||| |||  |    
T  3606986 ctacatgagttaacttacgctggaaaatacacctacgtgagttaactcacgttaaaaatacacatgcgtgagtcaattcacgctcaactattttacgaaa 3607085  T
Q  291 atgagcaaaatcagataggagaaaagcaatta 322  Q
    ||||||||||  |||| |||||| ||||||||    
T  3607086 atgagcaaaaatagatgggagaagagcaatta 3607117  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 30841279 - 30841226
Alignment:
Q  151 gagaattgttcttctcacatctgtttttgttcattcctgtcctacatgagttaa 204  Q
    |||||||| |||||||||||||||||||| | |||||||| |||| ||||||||    
T  30841279 gagaattgctcttctcacatctgtttttgcttattcctgttctacgtgagttaa 30841226  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 318
Target Start/End: Original strand, 2725849 - 2725907
Alignment:
Q  261 agttaactcacactcgactattt-gacgggaatgagcaaaatcagataggagaaaagca 318  Q
    ||||||||||| |||| |||||| ||||||||||||||||| ||||| |||||| ||||    
T  2725849 agttaactcacgctcggctattttgacgggaatgagcaaaaacagatgggagaagagca 2725907  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 3764594 - 3764630
Alignment:
Q  168 catctgtttttgttcattcctgtcctacatgagttaa 204  Q
    |||||||||||| |||||||| |||||||||||||||    
T  3764594 catctgtttttgctcattcctatcctacatgagttaa 3764630  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 249 - 313
Target Start/End: Complemental strand, 1845898 - 1845833
Alignment:
Q  249 tacacatgcataagttaactcacactcgactat-ttgacgggaatgagcaaaatcagataggagaa 313  Q
    ||||||||||||||||||||||| || |||||| |||||||||||||| |||| ||||||||||||    
T  1845898 tacacatgcataagttaactcacgcttgactatattgacgggaatgagaaaaaacagataggagaa 1845833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 151 - 320
Target Start/End: Complemental strand, 36139107 - 36138937
Alignment:
Q  151 gagaattgttcttctcacatctgtttttgttcattcctgtcctacatgagttaatttacgct-aaaaatacacttacgcgggtcaactcaccttgaaatt 249  Q
    |||||||| ||||||| ||| |||||||| ||||||   ||| ||||||||||| | ||||| |||||| ||| |||  | || ||||||| |||||| |    
T  36139107 gagaattgctcttctcccatatgtttttgctcattctcatccaacatgagttaactcacgctgaaaaattcacatacatgagttaactcacgttgaaaat 36139008  T
Q  250 acacatgcataagttaactcacactcgacta-tttgacgggaatgagcaaaatcagataggagaaaagcaat 320  Q
     ||||||| | |||||||||||  |||  || ||||||| ||||||| |||| ||||| |||||||||||||    
T  36139007 gcacatgcgtgagttaactcacgttcgcttattttgacgagaatgag-aaaaacagatgggagaaaagcaat 36138937  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 959222 - 959152
Alignment:
Q  152 agaattgttcttctcacatctgtttttgttcattcctgtcctacatgagttaatttacgctaaaaatacac 222  Q
    ||||||| ||||||| ||| |||||||||||||| | | ||||| |||||||| ||||||| |||||||||    
T  959222 agaattgctcttctctcatttgtttttgttcatttccgccctacgtgagttaacttacgctgaaaatacac 959152  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 243 - 324
Target Start/End: Complemental strand, 959162 - 959081
Alignment:
Q  243 tgaaattacacatgcataagttaactcacactcgactatttgacgggaatgagcaaaatcagataggagaaaagcaattatc 324  Q
    ||||| ||||| ||||| |||||||| || ||||| ||||| |||| |||||||||||  |||| |||||| ||||||||||    
T  959162 tgaaaatacacctgcatcagttaactgacgctcgattatttaacggaaatgagcaaaaatagatgggagaagagcaattatc 959081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 300
Target Start/End: Complemental strand, 33648262 - 33648222
Alignment:
Q  261 agttaactcacactcgacta-tttgacgggaatgagcaaaa 300  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  33648262 agttaactcacactcgactattttgacgggaatgagcaaaa 33648222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 324
Target Start/End: Original strand, 52450178 - 52450242
Alignment:
Q  261 agttaactcacactcgactattt-gacgggaatgagcaaaatcagataggagaaaagcaattatc 324  Q
    ||||||||||| |||| |||||| |||||||||||| |||| ||||| |||| ||||||||||||    
T  52450178 agttaactcacgctcggctattttgacgggaatgagtaaaaacagatgggaggaaagcaattatc 52450242  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 243 - 333
Target Start/End: Original strand, 33486907 - 33486997
Alignment:
Q  243 tgaaattacacatgcataagttaactcacactcgactatttgacgggaatgagcaaaatcagataggagaaaagcaattatcaaagaaaaa 333  Q
    ||||| ||||| |||||||||||||||||| ||| |||||||||| ||||||||||||  |||   ||||| ||||||||| ||| |||||    
T  33486907 tgaaaatacacttgcataagttaactcacattcggctatttgacgagaatgagcaaaaatagacgagagaagagcaattataaaaaaaaaa 33486997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 151 - 212
Target Start/End: Original strand, 36703028 - 36703089
Alignment:
Q  151 gagaattgttcttctcacatctgtttttgttcattcctgtcctacatgagttaatttacgct 212  Q
    ||||||||||| |||| ||| |||||||| ||||||| ||||||| |||||||||| |||||    
T  36703028 gagaattgttcatctctcatatgtttttgctcattcccgtcctacgtgagttaattcacgct 36703089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 324
Target Start/End: Original strand, 18360163 - 18360206
Alignment:
Q  281 tttgacgggaatgagcaaaatcagataggagaaaagcaattatc 324  Q
    |||||||||||||| ||||| |||||||||||| ||||||||||    
T  18360163 tttgacgggaatgatcaaaaccagataggagaagagcaattatc 18360206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 224
Target Start/End: Complemental strand, 9144237 - 9144172
Alignment:
Q  160 tcttctcacatctgtttttgttcattcctgtcctacatgagttaatttacgct-aaaaatacactt 224  Q
    ||||||| |||||||||||||||||| | | | ||| ||||||||||||||||  |||||||||||    
T  9144237 tcttctctcatctgtttttgttcatttccgccttacgtgagttaatttacgctggaaaatacactt 9144172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 313
Target Start/End: Complemental strand, 20991614 - 20991562
Alignment:
Q  262 gttaactcacactcgactattt-gacgggaatgagcaaaatcagataggagaa 313  Q
    |||||||||| |||| |||||| |||||||||||||||||| |||| ||||||    
T  20991614 gttaactcacgctcggctattttgacgggaatgagcaaaattagatgggagaa 20991562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 327
Target Start/End: Complemental strand, 23280 - 23187
Alignment:
Q  234 aactcaccttgaaattacacatgcataagttaactcacactcgactatttgacgggaatgagcaaaatcagataggagaaaagcaattatcaaa 327  Q
    ||||||| |||||||||||||||| | |||| |||||| |||  ||||||||||| ||| |||||||  |||| |||||| |||||||| ||||    
T  23280 aactcacgttgaaattacacatgcgtgagttcactcacgctctgctatttgacggaaataagcaaaaatagatgggagaagagcaattaccaaa 23187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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