View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15577_low_6 (Length: 405)

Name: NF15577_low_6
Description: NF15577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15577_low_6
NF15577_low_6
[»] chr2 (1 HSPs)
chr2 (4-405)||(43315988-43316390)


Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 4 - 405
Target Start/End: Original strand, 43315988 - 43316390
Alignment:
Q  4 taaacagaatcatcaaattttaaaataataatcattattctaataaattaaatattaaaggacaaacttctgacacacttgatgaacatatgagacaaag 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43315988 taaacagaatcatcaaattttaaaataataatcattattctaataaattaaatattaaaggacaaacttctgacacacttgatgaacatatgagacaaag 43316087  T
Q  104 gttacgaattaaaaacaaagaacaaaggtgaaattgaaaaagtggtaataattacttggaaaaagcctaagaacttcttaaattcnnnnnnntagaaaga 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  43316088 gttacgaattaaaaacaaagaacaaaggtgaaattgaaaaagtggtaataattacttggaaaaagcctaagaacttcttaaattcaaaaaaatagaaaga 43316187  T
Q  204 ccatcaataattagcctacaaagtacaaaggaacataataattcctagttttccatgcttaaattttaagtannnnnnnacaaattat-nnnnnnnnnnn 302  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||                
T  43316188 ccatcaataattaccctacaaagtacaaaggaacataataattcctagttttccatgcttaaattttaagtatttttttacaaattataaaaaaaataaa 43316287  T
Q  303 nnncctctttgttcaaagttggaataggaacctttcagtaacacccttttaggccctggtgaaaatgagttagagattttggattttaacttgtggaaga 402  Q
       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  43316288 aaacctctttgttcaaagttggaataggaacctttcagtaacacccttttaggccctggtgaaaatgagttagagattttggattttaacttgtggtaga 43316387  T
Q  403 aaa 405  Q
    |||    
T  43316388 aaa 43316390  T

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