View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15577_low_7 (Length: 396)
Name: NF15577_low_7
Description: NF15577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15577_low_7 |
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| [»] scaffold0007 (5 HSPs) |
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| [»] scaffold0573 (2 HSPs) |
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Alignment Details
Target: scaffold0007 (Bit Score: 310; Significance: 1e-174; HSPs: 5)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 33394 - 33020
Alignment:
| Q |
1 |
ttctaaatttttgagacctgacatatcaggtatcgatatcaaagaattacaaaaataaaagtgtaaaattctcatattcctgaagtactgcaaaacagaa |
100 |
Q |
| |
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||||||||||| |||||||||||||| |||||||||| |||||||||||||| | ||| ||||||||||||||||||||| |||||||||||||| || |
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| T |
33394 |
ttctaaattttggagacctgacatattaggtatcgatctcaaagaattacaatgaagaaactgtaaaattctcatattcctgcagtactgcaaaacaaaa |
33295 |
T |
|
| Q |
101 |
caaaaaacaaataaatgagtgaacgagcgagtgatcttaattaatgtgacattattaattggattaaatatatttttcttctttacaaaattatcagctt |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33294 |
caaaaaacaaataaatgagtga----gcgagtgatcttaattaatgtgacattattaattggattaaatatatttttcttctttacaaaattatcagctt |
33199 |
T |
|
| Q |
201 |
ttattttaggtgctcataagaaaatggcatgtttacgcttttataaaattttcaagaatgttaagaatattataaattcatcacgcttgccttcttgaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33198 |
ttattttaggtgctcataagaaaatggcatgtttacgcttttataaaattttcaagaatgttaagaatattataaattcatcacgcttgccttcttgaaa |
33099 |
T |
|
| Q |
301 |
aagtcttcccgaggacgataaaattcagagctcaatttgcatatggtgagttgcctcggcaaaaaatcaaccgggaaat |
379 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||| |
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|
| T |
33098 |
aagtcttcccgaggacgataaaattcagagctcaatttgcatatgatgagttgcctcgggagaaaatcaaccgggaaat |
33020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 38143 - 37769
Alignment:
| Q |
1 |
ttctaaatttttgagacctgacatatcaggtatcgatatcaaagaattacaaaaataaaagtgtaaaattctcatattcctgaagtactgcaaaacagaa |
100 |
Q |
| |
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||||||||||| |||||||||||||| |||||||||| |||||||||||||| | ||| ||||||||||||||||||||| |||||||||||||| || |
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|
| T |
38143 |
ttctaaattttggagacctgacatattaggtatcgatctcaaagaattacaatgaagaaactgtaaaattctcatattcctgcagtactgcaaaacaaaa |
38044 |
T |
|
| Q |
101 |
caaaaaacaaataaatgagtgaacgagcgagtgatcttaattaatgtgacattattaattggattaaatatatttttcttctttacaaaattatcagctt |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38043 |
caaaaaacaaataaatgagtga----gcgagtgatcttaattaatgtgacattattaattggattaaatatatttttcttctttacaaaattatcagctt |
37948 |
T |
|
| Q |
201 |
ttattttaggtgctcataagaaaatggcatgtttacgcttttataaaattttcaagaatgttaagaatattataaattcatcacgcttgccttcttgaaa |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37947 |
ttattttaggtgctcataagaaaatggcatgtttacgcttttataaaattttcaagaatgttaagaatattataaattcatcacgcttgccttcttgaaa |
37848 |
T |
|
| Q |
301 |
aagtcttcccgaggacgataaaattcagagctcaatttgcatatggtgagttgcctcggcaaaaaatcaaccgggaaat |
379 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||| |
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| T |
37847 |
aagtcttcccgaggacgataaaattcagagctcaatttgcatatgatgagttgcctcgggagaaaatcaaccgggaaat |
37769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #3
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 25054 - 24680
Alignment:
| Q |
1 |
ttctaaatttttgagacctgacatatcaggtatcgatatcaaagaattacaaaaataaaagtgtaaaattctcatattcctgaagtactgcaaaacagaa |
100 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||| |||||||||||||| | ||| ||||||||||||||||||||| |||||||||||||| || |
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| T |
25054 |
ttctaaattttggagacctgacatattaggtatcgatctcaaagaattacaatgaagaaactgtaaaattctcatattcctgcagtactgcaaaacaaaa |
24955 |
T |
|
| Q |
101 |
caaaaaacaaataaatgagtgaacgagcgagtgatcttaattaatgtgacattattaattggattaaatatatttttcttctttacaaaattatcagctt |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24954 |
caaaaaacaaataaatgagtga----gcgagtgatcttaattaatgtgacattattaattggattaaatatatttttcttctttacaaaattatcagctt |
24859 |
T |
|
| Q |
201 |
ttattttaggtgctcataagaaaatggcatgtttacgcttttataaaattttcaagaatgttaagaatattataaattcatcacgcttgccttcttgaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24858 |
ttattttaggtgctcataagaaaatagcatgtttacgcttttataaaattttcaagaatgttaagaatattataaattcatcacgcttgccttcttgaaa |
24759 |
T |
|
| Q |
301 |
aagtcttcccgaggacgataaaattcagagctcaatttgcatatggtgagttgcctcggcaaaaaatcaaccgggaaat |
379 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||| |
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| T |
24758 |
aagtcttcccgaggacgataaaattcagagctcaatttgcatatgatgagttgcctcgggagaaaatcaaccgggaaat |
24680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #4
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 69715 - 69444
Alignment:
| Q |
1 |
ttctaaatttttgagacctgacatatcaggtatcgatatcaaagaattacaaaaataaaagtgtaaaattctcatattcctgaagtactgcaaaacagaa |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||| |||||||||||||||||||||| || |
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|
| T |
69715 |
ttctaaattttggagacctgacatatcaggtatcgatctcaaagaattacaatcatgaaagtgtaaaattctcagattcctgaagtactgcaaaacaaaa |
69616 |
T |
|
| Q |
101 |
caaaaaacaaataaatgagtgaacgagcgagtgatcttaattaatgtgacattattaattggattaaatatatttttcttctttacaaaattatcagctt |
200 |
Q |
| |
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|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
69615 |
caaaaaacaaataagtgagtga----gcgagtgatcttaattaatgtgacattattaattggattaaatatatttttcttctttacaaaattatcagctt |
69520 |
T |
|
| Q |
201 |
ttattttaggtgctcataagaaaatggcatgtttacgcttttataaaattttcaagaatgttaagaatattataaa |
276 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
69519 |
ttattttaggtgctcataagaaaatagcatgtttacgcttttataaaattttcaagaatgttaagaatattataaa |
69444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 271 - 379
Target Start/End: Complemental strand, 68487 - 68379
Alignment:
| Q |
271 |
tataaattcatcacgcttgccttcttgaaaaagtcttcccgaggacgataaaattcagagctcaatttgcatatggtgagttgcctcggcaaaaaatcaa |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||| |||||||||| |
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|
| T |
68487 |
tataaattcatcacgcttgccttcttgaaaaagtcttcccgaggacgatacaattcagagctcaatatgcatatggtgagttgcttcgggaaaaaatcaa |
68388 |
T |
|
| Q |
371 |
ccgggaaat |
379 |
Q |
| |
|
||||||||| |
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|
| T |
68387 |
ccgggaaat |
68379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0573 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: scaffold0573
Description:
Target: scaffold0573; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 5103 - 5243
Alignment:
| Q |
1 |
ttctaaatttttgagacctgacatatcaggtatcgatatcaaagaattacaaaaataaaagtgtaaaattctcatattcctgaagtactgcaaaacagaa |
100 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||| ||||||||| |||||| | ||| ||||| || ||||||||| | ||||||||||||||| || |
|
|
| T |
5103 |
ttctaaattttggagacctgacacatcaggtatcgatctcaaagaatcacaaaagtgaaactgtaacatcctcatattcttaaagtactgcaaaacaaaa |
5202 |
T |
|
| Q |
101 |
caaaaaacaaataaatgagtgaacgagcgagtgatcttaattaat |
145 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
5203 |
caaaaaacaaataaatgagt----gagcaagtgatcttaattaat |
5243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0573; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 271 - 374
Target Start/End: Original strand, 7052 - 7155
Alignment:
| Q |
271 |
tataaattcatcacgcttgccttcttgaaaaagtcttcccgaggacgataaaattcagagctcaatttgcatatggtgagttgcctcggcaaaaaatcaa |
370 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||| | ||||||| |||| | || |||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
7052 |
tataaattcatcacacttgccttcttgaaaaagacttcctgtggacgattaaatgtaaagttcaatttgcataatgtgagttgcctcgggtaaaaatcaa |
7151 |
T |
|
| Q |
371 |
ccgg |
374 |
Q |
| |
|
|||| |
|
|
| T |
7152 |
ccgg |
7155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 28904697 - 28904557
Alignment:
| Q |
1 |
ttctaaatttttgagacctgacatatcaggtatcgatatcaaagaattacaaaaataaaagtgtaaaattctcatattcctgaagtactgcaaaacagaa |
100 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||| ||||||||| |||||| | ||| ||||| || ||||||||| | ||||||||||||||| || |
|
|
| T |
28904697 |
ttctaaattttggagacctgacacatcaggtatcgatctcaaagaatcacaaaagtgaaactgtaacatcctcatattcttaaagtactgcaaaacaaaa |
28904598 |
T |
|
| Q |
101 |
caaaaaacaaataaatgagtgaacgagcgagtgatcttaattaat |
145 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
28904597 |
caaaaaacaaataaatgagt----gagcaagtgatcttaattaat |
28904557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 271 - 374
Target Start/End: Complemental strand, 28902742 - 28902639
Alignment:
| Q |
271 |
tataaattcatcacgcttgccttcttgaaaaagtcttcccgaggacgataaaattcagagctcaatttgcatatggtgagttgcctcggcaaaaaatcaa |
370 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||| | ||||||| |||| | || |||||||||||| |||||||||||||| ||||||||| |
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|
| T |
28902742 |
tataaattcatcacacttgccttcttgaaaaagacttcctgtggacgattaaatgtaaagttcaatttgcataatgtgagttgcctcgggtaaaaatcaa |
28902643 |
T |
|
| Q |
371 |
ccgg |
374 |
Q |
| |
|
|||| |
|
|
| T |
28902642 |
ccgg |
28902639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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