View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15577_low_9 (Length: 332)
Name: NF15577_low_9
Description: NF15577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15577_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 309
Target Start/End: Original strand, 43383635 - 43383943
Alignment:
| Q |
19 |
gtcaagggctgtttcgccaatacaacaa------taaccgcttcttctaattctactactggaaggacattcatgacgcctcacgatgacacaatgactc |
112 |
Q |
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| T |
43383635 |
gtcaagggctgtttcgccaatacaacaacaacaataaccgcttcttctaattctactactggaaggacgttcatgacgcctcacgatgacacaatgactc |
43383734 |
T |
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| Q |
113 |
gtggtggaaacgtgg------aaggggaagcggttaataataatgagatgataaactgcatcatcggacacaagtgtagcatatgtttgagggtatttag |
206 |
Q |
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| T |
43383735 |
gtggtggaaacgtggaagtggaaggggaagcggttaataataatgagatgattaactgcatcatcggacacaagtgtagcatatgtttgagggtatttag |
43383834 |
T |
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| Q |
207 |
cactggacaagcactcggtggtcataagaggtgtcattgggaaaaagtggaaccca------caacaccaacaccaacactaccatttgatttgaatttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
43383835 |
cactggacaagcactcggtggtcataagaggtgtcattgggaaaaagtggaacccaaaacaccaacaccaacaccaacactaccatttgatttgaatttc |
43383934 |
T |
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| Q |
301 |
ccttttcca |
309 |
Q |
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| T |
43383935 |
ccttttcca |
43383943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 116 - 309
Target Start/End: Original strand, 25870423 - 25870613
Alignment:
| Q |
116 |
gtggaaacgtggaaggggaagcggttaataataatgaga-tgataa--actgcatcatcggacacaagtgtagcatatgtttgagggtatttagcactgg |
212 |
Q |
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|||||||||| |||||||||| |||||||| |||| | | | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25870423 |
gtggaaacgttgaaggggaagaggttaatagtaataataataataatgactgcatcatcggacacaagtgtagcatatgtttgagggtatttagcactgg |
25870522 |
T |
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| Q |
213 |
acaagcactcggtggtcataagaggtgtcattgggaaaaagtggaacccacaacaccaacaccaacactaccatttgatttgaatttcccttttcca |
309 |
Q |
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| T |
25870523 |
acaagcactcggtggtcataagaggtgtcattgggataaaggggaaccca------cgacaccaacactaccatttgatttgaatttcccttttcca |
25870613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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