View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15578_high_1 (Length: 580)
Name: NF15578_high_1
Description: NF15578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15578_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 19 - 366
Target Start/End: Original strand, 3091216 - 3091567
Alignment:
| Q |
19 |
gctatgagatcatttcctcttctcttgcaaaagaaattaaagtgcatcccatttaaaataaaaatcaattaattttatagagtttgaagtagtatccgat |
118 |
Q |
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| T |
3091216 |
gctatgagatcatttcctcttctcttgcaaaagaaa-----gggcatcccatttaaaataaaaatcaattaattttatagagtttgaagtagtatccgat |
3091310 |
T |
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| Q |
119 |
agtcatgattattttgagcccgagtatatgtcttatttaagtaacgtaagtgttacaaccaaaatagt---------ttttgttgatgctaataattcaa |
209 |
Q |
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| T |
3091311 |
agtcatgattattttgagtccgagtatatgtcttatttaagtaatgtaagtgttacaaccaaaatagtgcatttagtttttgttgatgctaataattcaa |
3091410 |
T |
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| Q |
210 |
atcctaatattattcattttttaaaataagtcctaatccaattttttaatgtatggataaggtaatttagataataaatctacctcaaagacatcactgt |
309 |
Q |
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| T |
3091411 |
atcataatattattcattttttaaaataagtcctaatccaattttttaatgtatggataaggtaatttagataataaatctacctcaaagacatcagtgt |
3091510 |
T |
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| Q |
310 |
tgaagatggttacacatctaaatcacaaagatataaatcgagaaaacacacaaaatg |
366 |
Q |
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| T |
3091511 |
tgaagatggttacacatctaaatcacaaagatataaatcgagaaaacacacaaaatg |
3091567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 410 - 566
Target Start/End: Original strand, 3091565 - 3091718
Alignment:
| Q |
410 |
atgatgatattggtttcatgcttgaaggaataatttgaaatgaaatcataacacaagatgatggaagtatggtcaaatggtcaacgggaatcaacaaatg |
509 |
Q |
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| T |
3091565 |
atgatgatattggtttcatgcttgaaggaataattttaaatgaaatcataacacaagatgc---aagtatggtcaaatggtcaacgggaatcaacaaatg |
3091661 |
T |
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| Q |
510 |
caggcagacacttggtggtagggtgtctgtaatttcagacaaaattgtttttcttct |
566 |
Q |
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| T |
3091662 |
caggcagacacgtggtggtagggggtctgtaatatccgacaaaattgtttttcttct |
3091718 |
T |
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