View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15578_low_2 (Length: 613)
Name: NF15578_low_2
Description: NF15578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15578_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-107; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 108 - 345
Target Start/End: Complemental strand, 24806575 - 24806339
Alignment:
| Q |
108 |
aaaaaggggttgataatgttgagaaataagttgctggaaaatcaactaatagggatgttattgctaacaaattgagttgttggaaagaaaaagaaaaata |
207 |
Q |
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| T |
24806575 |
aaaaaggggttgcaaatgttgagaaatacgttgctggaaaatcaattaatagggatgttattgctaacaaattgagttattggaaagaaaaa-aaaaata |
24806477 |
T |
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| Q |
208 |
gagtttatgtttcaatggggaaaaacaagcaagtggaacttcaaattccacaaaccgtttatgtgaatgtgccaaacacttttcttaatattcttcagca |
307 |
Q |
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| T |
24806476 |
gagtttatgtttcaatggggaaaaacatgcaagtggaacttcaaattccacaaactgtttatgtgaatgtgccaaacacttttcttagtattcttcagca |
24806377 |
T |
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| Q |
308 |
tacagaaacaattcaaatcaagattactactaaattaa |
345 |
Q |
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| T |
24806376 |
tacagaaacaattcaaatcaagattactactaaattaa |
24806339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 430 - 597
Target Start/End: Complemental strand, 24806339 - 24806179
Alignment:
| Q |
430 |
atggtgcatcttttagcaatgctattcaatggtataaagctccttcaagtgatttgattggtactagcacaaaaattaaatgaaattcttgcaaaactta |
529 |
Q |
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| T |
24806339 |
atggtgcatcttttagcaatgctattcaatggtataaagctccttcaagtgatttgattggtactagcacaaaaattaaatgaaattcatgcaaaaatta |
24806240 |
T |
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| Q |
530 |
tagcataaggtatattgaatnnnnnnnnnnttctagggaaagaacttattcttctcttcgtgacattt |
597 |
Q |
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| T |
24806239 |
t------aggtatattgaat-tttcttttttcctagggaaagaacttattcttctcttcgtgacattt |
24806179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 24806646 - 24806570
Alignment:
| Q |
12 |
cataggacacccaatacagcaatgcaacaaaattgctnnnnnnntcgatggatttgaattatgagattaagaaaaag |
88 |
Q |
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| T |
24806646 |
cataggacactcaatacagcaatgcaacaaaattgctaaaaaagccgatggatttgaattatgagaataagaaaaag |
24806570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 32403287 - 32403394
Alignment:
| Q |
18 |
acacccaatacagcaatgcaacaaaattgctnnnnnnntcgatggatttgaattatgagattaagaaaaagcatgccactatgtctcacaaaaaaggggt |
117 |
Q |
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| T |
32403287 |
acactcaatacaacaatgcaacaaaattgctcataaatt-gatggatttgaataatgagaataagaaaaatcatgccactatatatcacaaaaaaggggt |
32403385 |
T |
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| Q |
118 |
tgataatgt |
126 |
Q |
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| T |
32403386 |
tgttaatgt |
32403394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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