View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15578_low_4 (Length: 554)
Name: NF15578_low_4
Description: NF15578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15578_low_4 |
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| [»] scaffold0089 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 121 - 538
Target Start/End: Complemental strand, 16729391 - 16728973
Alignment:
| Q |
121 |
cttcaccatccttcaactcaaaaactgaagtccaaaactgaaatcaaaatcaaagtcagaatcgaaatcaaaggaagaagttggaatcgaagtcggaatc |
220 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
16729391 |
cttcaccgtccttcaactcaaaaactgaagtccaaaactgaaatcaaaatcaaagtcataatcgaaatcaaaggaagaagttggaatcgaagtctgaatc |
16729292 |
T |
|
| Q |
221 |
gtggtggtgaaatggtttctctcattcttctctggttatatcttcattcccttcttttacacttccattgtctctctttattatggttgaattagaaaac |
320 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||| |
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|
| T |
16729291 |
gtggtggtgaaatcgtttctctcattcttctctggttagatcttcattcccttcttttacatttccattctctctctttattatggttgaattagataac |
16729192 |
T |
|
| Q |
321 |
ctagaaattgaattgtaaaccac-ttatttagctcggtgtttttgaaagcacgacggagggagcgaagggttgagagaaaggagagagtagtgaagagag |
419 |
Q |
| |
|
|||||||||||||| |||||||| | ||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
16729191 |
ctagaaattgaattctaaaccacatgatttagctccgtgtttttgaaatcacgacggagggagcgaaggaatgagagaaaggagagagtagtgaagagag |
16729092 |
T |
|
| Q |
420 |
tgaaaacgggggcgtttggggaggaaggagaggaagacgtgagaagctaggagagagtgaggtggtggagatgaatccattgcggtgtcgattgggggaa |
519 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16729091 |
tgaaaacggggtcgtttggggaggaaggagaggaagacgtgagaagcaaggagagagtgaggtggtggagatgaatccattgcggtgtcgattgggggaa |
16728992 |
T |
|
| Q |
520 |
ttaggtgggaaggtgaaac |
538 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
16728991 |
ttaggtgggaaggtgaaac |
16728973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 16729419 - 16729378
Alignment:
| Q |
79 |
caccgtccttccttcattctcgaaagagcttcaccgtccttc |
120 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
16729419 |
caccgtccttccttcattctcgaaagagcttcaccgtccttc |
16729378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 20512400 - 20512465
Alignment:
| Q |
237 |
ttctctcattcttctctggttatatcttcattcccttcttttacacttccattgtctctctttatt |
302 |
Q |
| |
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||||||| |||||||||||||| ||||||||| ||||||||||| ||||||| |||| ||||||| |
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| T |
20512400 |
ttctctctttcttctctggttagatcttcattttcttcttttacagttccattctctccctttatt |
20512465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 77 - 538
Target Start/End: Complemental strand, 49946812 - 49946364
Alignment:
| Q |
77 |
ttcaccgtccttccttcattctcgaaagagcttcaccgtccttccttcaccatccttcaactcaaaaactgaagtccaaaactgaaatcaaaatcaaagt |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
49946812 |
ttcaccgtccttccttcattctcgaaagagcttcaccgtccttc--------------aactcaaaaactgaagtccaaaactgaaatcaaaatcaaagt |
49946727 |
T |
|
| Q |
177 |
cagaatcgaaatcaaaggaagaagttggaatcgaagtcggaatcgtggtggtgaaatggtttctctcattcttctctggttatatcttcattcccttctt |
276 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
49946726 |
cataatcgaaatcaaaggaagaagttggaatcgaagtctgaatcgtggtggtgaaatcgtttctctcattcttctctggttagatcttcattcccttctt |
49946627 |
T |
|
| Q |
277 |
ttacacttccattgtctctctttattatggttgaattagaaaacctagaaattgaattgtaaaccac-ttatttagctcggtgtttttgaaagcacgacg |
375 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||| | ||||||||| |||||||||||| ||||||| |
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| T |
49946626 |
ttacatttccattttctctctttattatggttgaattagataacctagaaattgaattctaaaccacatgatttagctccgtgtttttgaaatcacgacg |
49946527 |
T |
|
| Q |
376 |
gagggagcgaagggttgagagaaaggagagagtagtgaagagagtgaaaacgggggcgtttggggaggaaggagaggaagacgtgagaagctaggagaga |
475 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
49946526 |
gagggagcgaaggaatgagagaaaggagagagtagtgaagagagtgaaaacgggggcgtttggggaggaaggagatgaagacgtgagaagcgaggagaga |
49946427 |
T |
|
| Q |
476 |
gtgaggtggtggagatgaatccattgcggtgtcgattgggggaattaggtgggaaggtgaaac |
538 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
49946426 |
gtgaggtggtggagatgaatccattgtggtgtcgattgggggaattaggtgggaaggtgaaac |
49946364 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 148; Significance: 8e-78; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 356 - 538
Target Start/End: Original strand, 14240057 - 14240244
Alignment:
| Q |
356 |
gtgtttttgaaagcacgacggagggagcgaagggttgagagaaaggagagagtagtgaagagagtgaaaacgggggcgtttggggag-----gaaggaga |
450 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
14240057 |
gtgtttttgaaagcacgacggagggagcgaaggaatgagagaaaggagagaggagtgaagagagtgaaaacgggggcgtttggggagaggaggaaggaga |
14240156 |
T |
|
| Q |
451 |
ggaagacgtgagaagctaggagagagtgaggtggtggagatgaatccattgcggtgtcgattgggggaattaggtgggaaggtgaaac |
538 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
14240157 |
ggaagacgtgagaagcgaggagagagtgaggtggtggagatgaatccattgcggtggcgattgggggaattaggtgggaaggtgaaac |
14240244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 209 - 330
Target Start/End: Complemental strand, 17009548 - 17009427
Alignment:
| Q |
209 |
gaagtcggaatcgtggtggtgaaatggtttctctcattcttctctggttatatcttcattcccttcttttacacttccattgtctctctttattatggtt |
308 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
17009548 |
gaagtcggaatcgtggtggtgaaaatgtttctctctttcttctctggttagatcttcattcccttcttttacacttccattctctctctttattatggtt |
17009449 |
T |
|
| Q |
309 |
gaattagaaaacctagaaattg |
330 |
Q |
| |
|
|||||||| ||||||| ||||| |
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|
| T |
17009448 |
gaattagataacctaggaattg |
17009427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 20028247 - 20028312
Alignment:
| Q |
237 |
ttctctcattcttctctggttatatcttcattcccttcttttacacttccattgtctctctttatt |
302 |
Q |
| |
|
||||||| |||||||||||||| ||||||||| ||||||||||| ||||||| |||||||||||| |
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|
| T |
20028247 |
ttctctctttcttctctggttagatcttcattttcttcttttacagttccattctctctctttatt |
20028312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 8e-44; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 164 - 286
Target Start/End: Complemental strand, 24501296 - 24501174
Alignment:
| Q |
164 |
tcaaaatcaaagtcagaatcgaaatcaaaggaagaagttggaatcgaagtcggaatcgtggtggtgaaatggtttctctcattcttctctggttatatct |
263 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||| | |||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||| |
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|
| T |
24501296 |
tcaaaatcaaagtcagaatcgaaatcgaagtaagaagtcgaaatcgaagtcggaatcgtggtggtgaaaacgtttctctctttcttctctggttagatct |
24501197 |
T |
|
| Q |
264 |
tcattcccttcttttacacttcc |
286 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
24501196 |
tcattcccttcttttacacttcc |
24501174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 110
Target Start/End: Complemental strand, 24501374 - 24501343
Alignment:
| Q |
79 |
caccgtccttccttcattctcgaaagagcttc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
24501374 |
caccgtccttccttcattctcgaaagagcttc |
24501343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 13371431 - 13371366
Alignment:
| Q |
237 |
ttctctcattcttctctggttatatcttcattcccttcttttacacttccattgtctctctttatt |
302 |
Q |
| |
|
||||||| |||||||||||||| ||||||||| ||||||||||| ||||||| |||| ||||||| |
|
|
| T |
13371431 |
ttctctctttcttctctggttagatcttcattttcttcttttacagttccattctctccctttatt |
13371366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0089 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0089
Description:
Target: scaffold0089; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 33391 - 33448
Alignment:
| Q |
245 |
ttcttctctggttatatcttcattcccttcttttacacttccattgtctctctttatt |
302 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||| ||||||| |||| ||||||| |
|
|
| T |
33391 |
ttcttctctggttagatcttcattttcttcttttacagttccattctctccctttatt |
33448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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