View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15578_low_5 (Length: 528)
Name: NF15578_low_5
Description: NF15578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15578_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 16 - 518
Target Start/End: Complemental strand, 742631 - 742148
Alignment:
| Q |
16 |
ggaacaacaccatgtgtcaagattgattgatgcagcaccagggtaagtgttttgtccatgtgaaataagagctacgtacaaatgtcggtcaattcaacct |
115 |
Q |
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|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
742631 |
ggaacaacactatgtgtccagattgattgatgcagcaccagggtaagtgttttgtccatgtgaaataattaagagctacaaatgtcggtcaattcaacct |
742532 |
T |
|
| Q |
116 |
aagattgaagacatcattggnnnnnnncaattctagtttagacttatagtctttaacgttcaaaatatgcatctcatgtctcattcacttattctgaatt |
215 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
742531 |
aagattgaagacatcattg-----------------tttagacttatagtctttaacgttcaaaatatgcatctcatgtctcattcacttattctgaatt |
742449 |
T |
|
| Q |
216 |
aaattttcaggtttgttgcacaattaacagaattgttgtgagaagaaggccaaacattgtgctacttttcgaagaagtggagaaagcacatatttctgta |
315 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
742448 |
aaattttcaggtttgttgcacaattaacagaa--gttgtgagaagaaggccaaacattgtgctacttttcgaagaagtggagaaagcacatatttctgta |
742351 |
T |
|
| Q |
316 |
atcaacaaactactttatatcttagaggatgggagtttaactgatggacaaggcagaactgtggattttacgaacacggtcgttatcatgacctcgaacc |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
742350 |
atcaacaaactactttatatcttagaggatgggagtttaactgatggacaaggcagaactgtggattttacgaacacggtcgttatcatgacctcgaacc |
742251 |
T |
|
| Q |
416 |
ttggcgctgatcatctccaaagtggactttcaggaaaatgtaccatgcaagttgctcacgatcgagtaatgcaggaagtaactgatcatttctggttaga |
515 |
Q |
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| T |
742250 |
ttggcgctgatcatctccaaagtggactttcaggaaaatgtaccatgcaagttgctcacgatcgagtaatgcaggaagtaactgatcatttctggttaga |
742151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 143 - 507
Target Start/End: Complemental strand, 42449659 - 42449289
Alignment:
| Q |
143 |
caattctagtttagacttatagtctttaac---------gttcaaaatatgcatctcatgtctcattcacttattctgaattaaattttcaggtttgttg |
233 |
Q |
| |
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|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||| | ||||||||||||||| |
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| T |
42449659 |
caattctagtttagacttatagtctttaacttatcttgagttcgaaatatgcatctcatgtctcattcacttattttgaattga-ttttcaggtttgttg |
42449561 |
T |
|
| Q |
234 |
cacaattaacagaattgttgtgagaagaaggccaaacattgtgctacttttcgaagaagtggagaaagcacatatttctgtaatcaacaaactactttat |
333 |
Q |
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| T |
42449560 |
gacgattaacagaa--gttgtgagaagaaggccaaacagtgtgctacttttggaagaagtggagaaagcacatacttcagtaatcaacaaattactttat |
42449463 |
T |
|
| Q |
334 |
atcttagaggatgggagtttaactgatggacaaggcagaactgtggattttacgaacacggtcgttatcatgacctcgaaccttggcgctgatcatctcc |
433 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| || ||||||||| |
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| T |
42449462 |
atcttagaggatggaagtttaactgatggacaaggcagaactgtggattttacgaacatggtcattatcatgacctcgaaccttggtgccgatcatctct |
42449363 |
T |
|
| Q |
434 |
aaagtggactttcaggaaaatgtaccatgcaagttgctcacgatcgagtaatgcaggaagtaactgatcatttc |
507 |
Q |
| |
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||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| | ||| |||||| |
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| T |
42449362 |
taagtggactttcaggaaaatgtaccatccaagtagctcacgatcgagtaatgcaggaagtcagtgagcatttc |
42449289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 259 - 494
Target Start/End: Complemental strand, 740319 - 740079
Alignment:
| Q |
259 |
agaaggccaaacattgtgctacttttcgaagaagtggagaaagcacatatttctgtaatcaacaaactactttatatcttagaggatgggagtttaactg |
358 |
Q |
| |
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||||||||| ||| |||| ||||||| || ||||||||||||||||||| |||||| | |||| || ||| | ||||| | ||||||| |||||| |
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| T |
740319 |
agaaggccacacagtgtgatacttttagagcaagtggagaaagcacatatatctgtattaaacactctgcttgaagtcttaaattatgggaggctaactg |
740220 |
T |
|
| Q |
359 |
atggacaaggcagaactgtggattttacga-----acacggtcgttatcatgacctcgaaccttggcgctgatcatctccaaagtggactttcaggaaaa |
453 |
Q |
| |
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||||||||||||||||||||||||||| || |||| ||| ||||||||||||| |||||||| | || ||||||| ||||||||||||||||||| |
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| T |
740219 |
atggacaaggcagaactgtggattttaggataggaacacagtcattatcatgacctcaaaccttggttccgagcatctcctaagtggactttcaggaaaa |
740120 |
T |
|
| Q |
454 |
tgtaccatgcaagttgctcacgatcgagtaatgcaggaagt |
494 |
Q |
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| T |
740119 |
tgtaccatggaagttgctcgcgataaagtaatgcaggaagt |
740079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 42449887 - 42449840
Alignment:
| Q |
16 |
ggaacaacaccatgtgtcaagattgattgatgcagcaccagggtaagt |
63 |
Q |
| |
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|||||||||| || ||||||||||||||||||||||||||| |||||| |
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| T |
42449887 |
ggaacaacactatctgtcaagattgattgatgcagcaccagagtaagt |
42449840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 90
Target Start/End: Complemental strand, 42449774 - 42449743
Alignment:
| Q |
59 |
taagtgttttgtccatgtgaaataagagctac |
90 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
42449774 |
taagtgttttgtccatgtgaaataagagctac |
42449743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 278 - 496
Target Start/End: Original strand, 10046583 - 10046801
Alignment:
| Q |
278 |
tacttttcgaagaagtggagaaagcacatatttctgtaatcaacaaactactttatatcttagaggatgggagtttaactgatggacaaggcagaactgt |
377 |
Q |
| |
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||||||| || ||||| ||||||||||||| |||||| |||||| || ||| | || |||| || || || ||||||||||| ||||| |||||||| |
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| T |
10046583 |
tactttttgatgaagtagagaaagcacatacatctgtattcaacactctgcttcaagtcctagatgacggaagattaactgatggccaaggaagaactgt |
10046682 |
T |
|
| Q |
378 |
ggattttacgaacacggtcgttatcatgacctcgaaccttggcgctgatcatctccaaagtggactttcaggaaaatgtaccatgcaagttgctcacgat |
477 |
Q |
| |
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|||||||| |||||| ||| ||||||||||||| ||||| ||||| ||||||||| |||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
10046683 |
ggattttaggaacacagtcattatcatgacctcaaacctcggcgccgatcatctcataagtggactttcaggaaattgtaccatgcaagttgctcgcgac |
10046782 |
T |
|
| Q |
478 |
cgagtaatgcaggaagtaa |
496 |
Q |
| |
|
|||||||||| |||||||| |
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|
| T |
10046783 |
cgagtaatgctggaagtaa |
10046801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 398 - 496
Target Start/End: Original strand, 38708308 - 38708406
Alignment:
| Q |
398 |
ttatcatgacctcgaaccttggcgctgatcatctccaaagtggactttcaggaaaatgtaccatgcaagttgctcacgatcgagtaatgcaggaagtaa |
496 |
Q |
| |
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||||||||||||| |||||||| || || |||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
38708308 |
ttatcatgacctcaaaccttggtgccgagcatctcataagtggactttcaggaaaatgcaccatgcaagttgctcgtgatcgagtaatgcaggaagtaa |
38708406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 343 - 496
Target Start/End: Original strand, 45468309 - 45468462
Alignment:
| Q |
343 |
gatgggagtttaactgatggacaaggcagaactgtggattttacgaacacggtcgttatcatgacctcgaaccttggcgctgatcatctccaaagtggac |
442 |
Q |
| |
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|||||||| || ||||| ||||||||||||||||||||||||| ||||| || | ||||||||||| |||||||| ||||| |||||| ||||||| |
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| T |
45468309 |
gatgggaggttgactgacggacaaggcagaactgtggattttagaaacactgtgatcatcatgacctctaaccttggtgctgagcatctcttgagtggac |
45468408 |
T |
|
| Q |
443 |
tttcaggaaaatgtaccatgcaagttgctcacgatcgagtaatgcaggaagtaa |
496 |
Q |
| |
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|||||||||||||||||||||||| ||||| ||||||||| ||||||||||||| |
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|
| T |
45468409 |
tttcaggaaaatgtaccatgcaagctgctcgcgatcgagtgatgcaggaagtaa |
45468462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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