View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15578_low_6 (Length: 477)
Name: NF15578_low_6
Description: NF15578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15578_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 20 - 466
Target Start/End: Original strand, 7725095 - 7725538
Alignment:
| Q |
20 |
gataaagcatccaagttttataataatgactgtaatgatggtcattgtatataannnnnnngttgacagcattgtatataccaaagatgagcacattgag |
119 |
Q |
| |
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||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| | |
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| T |
7725095 |
gataaagcatccaagttttataatattgactctaatgatggtcattgtatataatttttttgttcacagcattgtatataccaaagatgagcacattccg |
7725194 |
T |
|
| Q |
120 |
tgaagatataaacaattacaagccaaaattattttattaaagtaataatactgtaagcaacaattgttcattccagatcataccaactacaaagcagatt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7725195 |
tgaagatataaacaattacaagccaaaattattttattaaagtaataatactgtaagcaacaattgttcattccagatcataccaactacaaagcagatt |
7725294 |
T |
|
| Q |
220 |
aaacaggagtatattatatataccagtacaatatatagtcaactaaaaaagattaaatgagtataagattatacattttcttcacatattcatttctata |
319 |
Q |
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|||||||||||| ||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7725295 |
aaacaggagtat--tatatataccagtacaa-atgtagtcaattaaaaaagattaaatgagtataagattatacattttcttcacatattcatttctata |
7725391 |
T |
|
| Q |
320 |
aaaaggaacccttcacagacattaaacactcatccattaccattagcattgaactcaccatggcttctttttctacacttttctccaccctaattctcac |
419 |
Q |
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||||||||||||||||| ||||||| ||||||||||||| || ||||||||||||||| |||||||||||| |||||||||||||| | ||||||||||| |
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| T |
7725392 |
aaaaggaacccttcacatacattaatcactcatccattagcaatagcattgaactcacaatggcttcttttgctacacttttctcctctctaattctcac |
7725491 |
T |
|
| Q |
420 |
agtagcccttctctcattttcttgctcatcacaacagttcttctcac |
466 |
Q |
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| T |
7725492 |
agtagcccttctctcattttcttgctcatcacaacagttcttctcac |
7725538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 20 - 466
Target Start/End: Original strand, 7732504 - 7732948
Alignment:
| Q |
20 |
gataaagcatccaagttttataataatgactgtaatgatggtcattgtatataannnnnnngttgacagcattgtatataccaaagatgagcacattgag |
119 |
Q |
| |
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||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| | |
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| T |
7732504 |
gataaagcatccaagttttataatattgaccgtaatgatggtcattgtatataatttttttgttgacagcattgtatataccaaagatgagctcattccg |
7732603 |
T |
|
| Q |
120 |
tgaagatataaacaattacaagccaaaattattttattaaagtaataatactgtaagcaacaattgttcattccagatcataccaactacaaagcagatt |
219 |
Q |
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|||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
7732604 |
tgaagatataaacaattagaaaccaaaactattttattaaagtaataatactgtaagcaacaattgtttattccagatcataccaactacaaagcatatt |
7732703 |
T |
|
| Q |
220 |
aaacaggagtatattatatataccagtacaatatatagtcaactaaaaaagattaaatga-gtataagattatacattttcttcacatattcatttctat |
318 |
Q |
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||| | || ||| ||||||||||| |||||||||||||| ||||||||||||||| | |||| |||||||||||||||| ||||||||||||||| | |
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| T |
7732704 |
aaagacgaatattatatatatacca---caatatatagtcaattaaaaaagattaaataatgtatcagattatacattttctacacatattcatttcttt |
7732800 |
T |
|
| Q |
319 |
aaaaaggaacccttcacagacattaaacactcatccattaccattagcattgaactcaccatggcttctttttctacacttttctccaccctaattctca |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7732801 |
aaaaaggaacccttcacagacattaaacactcatccattaccaatagcattgaactcaccatggcttctttttctacacttttctccactctaattctca |
7732900 |
T |
|
| Q |
419 |
cagtagcccttctctcattttcttgctcatcacaacagttcttctcac |
466 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7732901 |
caatagcccttctctcattttcttgctcatcacaacagttcttctcac |
7732948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 33 - 466
Target Start/End: Original strand, 7710204 - 7710638
Alignment:
| Q |
33 |
agttttataataatgactgtaatgatggtcattgtatataannnnnnngttgacagcattgtatataccaaagatgagcacattgagtgaagat-ataa- |
130 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||| |||||||| ||| |
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| T |
7710204 |
agttttataatattgactgtaatgatggtcattgtatataattttttttttgacacaattgtatatatcaaagatgagcacattccgtgaagatcatacc |
7710303 |
T |
|
| Q |
131 |
acaattacaagccaaaattattttattaaagtaataatactgtaagcaacaattgttcattccagatcataccaactacaaagcagattaaacaggagta |
230 |
Q |
| |
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| ||||| || ||||||| |||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||| |||||||| |||| | |
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| T |
7710304 |
aaaattagaaaccaaaataattttattaaagtaataatactgtaagcaacagttgctcatgccagatcataccaactacaaagaagattaaagagga--a |
7710401 |
T |
|
| Q |
231 |
tattatatataccagtacaatatatagtcaactaaaaaagattaaatga-gtataagattatacattttcttcacatattcatttctataaaaaggaa-c |
328 |
Q |
| |
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|||||||||||||||| ||| ||||||||| ||||||||||||||| | |||| ||||||||||||||||||| |||||||||||||| ||||||| | |
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| T |
7710402 |
tattatatataccagttcaag-tatagtcaattaaaaaagattaaataatgtatcagattatacattttcttcatttattcatttctatataaaggaagc |
7710500 |
T |
|
| Q |
329 |
ccttcacagacattaaacactcatccattaccattagcattgaactcaccatggcttctttttctacacttttctccaccctaattctcacagtagccct |
428 |
Q |
| |
|
|||||||| ||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
7710501 |
ccttcacatacattaatcactcatccattagccatagcattgaactcaccatggcttctttttctacacttttctccactctaattctcacaatagccct |
7710600 |
T |
|
| Q |
429 |
tctctcattttcttgctcatcacaacagttcttctcac |
466 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
7710601 |
tctctcattttcttgctcatcacaacagttcttctcac |
7710638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 20 - 250
Target Start/End: Original strand, 7717929 - 7718157
Alignment:
| Q |
20 |
gataaagcatccaagttttataataatgactgtaatgatggtcattgtatataannnnnnngttgacagcattgtatataccaaagatgagcacattgag |
119 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| | |
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| T |
7717929 |
gataaagcatccaagttttataatattgactgtaatgatagtcattgtatataattgttttcttgacagcattgtatatgccaaagatgagcacattccg |
7718028 |
T |
|
| Q |
120 |
tgaagatataaacaattacaagccaaaattattttattaaagtaataatactgtaagcaacaattgttcattccagatcataccaactacaaagcagatt |
219 |
Q |
| |
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||||||||||||||||||||| ||| || ||||||||| ||||||| |||||||||||||||||| || ||||||||||||||||||||||||| ||||| |
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| T |
7718029 |
tgaagatataaacaattacaaaccataactattttattgaagtaattatactgtaagcaacaatttttaattccagatcataccaactacaaagaagatt |
7718128 |
T |
|
| Q |
220 |
aaacaggagtatattatatataccagtacaa |
250 |
Q |
| |
|
||| |||| ||||||||||||||||||||| |
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|
| T |
7718129 |
aaagagga--atattatatataccagtacaa |
7718157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 280 - 466
Target Start/End: Complemental strand, 7747143 - 7746957
Alignment:
| Q |
280 |
gtataagattatacattttcttcacatattcatttctataaaaaggaacccttcacagacattaaacactcatccattaccattagcattgaactcacca |
379 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||| || ||||||||||||||| | |
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| T |
7747143 |
gtatgagattatacattttcttcacatatttatttctataaaaaggaacccttcacatacattaatcactcatccattagcaatagcattgaactcacaa |
7747044 |
T |
|
| Q |
380 |
tggcttctttttctacacttttctccaccctaattctcacagtagcccttctctcattttcttgctcatcacaacagttcttctcac |
466 |
Q |
| |
|
||||||||||| ||||||||||||| |||||| ||||||| ||| ||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
7747043 |
tggcttcttttgttacacttttctcctccctaactctcacaatagtccttctctcattttcatgctcatcacaacagttcttctcac |
7746957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 334
Target Start/End: Original strand, 7698464 - 7698500
Alignment:
| Q |
298 |
tcttcacatattcatttctataaaaaggaacccttca |
334 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||| |
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|
| T |
7698464 |
tcttcatatattaatttctataaaaaggaacccttca |
7698500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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