View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15578_low_7 (Length: 317)
Name: NF15578_low_7
Description: NF15578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15578_low_7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 32162401 - 32162085
Alignment:
| Q |
1 |
ttcattggatgaaaaagaaaaagcatgggaagaagggttatgtggggctaaaattggatatggtaaagcatatgatcgcatagaatggagttttctaatt |
100 |
Q |
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| T |
32162401 |
ttcattggatgaaaaagaaaaatcatgggaagaagggttatgtggggctaaaattggatatggtaaagcatatgatcgcatagaatggagttttctaatt |
32162302 |
T |
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| Q |
101 |
gttgtacttgattctatgggattttcgcaaaaatggcaaaatctagttttcaattgtatttcatctgtttctttctctatgctacttaatggtagtcctt |
200 |
Q |
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| T |
32162301 |
gctatatttgattctatgggattttcgcaaaaatggcaaaatctagttttcaattgtatttcatctgtttctttctccgtgctactaaatggtagtcctt |
32162202 |
T |
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| Q |
201 |
gccagatattttccccgcaacatgggttgcgtcaaggggaccccttatcaccttatttatttattttatgtgcagaggtattctcaagtctcctcaccaa |
300 |
Q |
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|||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
32162201 |
gccagacattttccccgcaacattggttgcgtcaaggggaccctttatcaccttatttatttattttatgtgcagaggtattctcaggtatcctcaccaa |
32162102 |
T |
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| Q |
301 |
agcacaaggggagaacg |
317 |
Q |
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| T |
32162101 |
agcacaaggggagaacg |
32162085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 26889007 - 26888702
Alignment:
| Q |
1 |
ttcattggatgaaaaagaaaaagcatgggaagaagggttatgtggggctaaaattggatatgg-taaagcatatgatcgcatagaatggagttttctaat |
99 |
Q |
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| T |
26889007 |
ttcattggatgaaaaataaaaagaatggcaagaaagattatgtggggataaaattggaaatgtctaaagcata----------gagtggagttttctaat |
26888918 |
T |
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| Q |
100 |
tgttgtacttgattctatgggattttcgcaaaaatggcaaaatctagttttcaattgtatttcatctgtttctttctctatgctacttaatggtagtcct |
199 |
Q |
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| T |
26888917 |
tgttgtacttggttctatgggattttcgcagaaatggtaaaatctaattttaaactgtatttcttttgtttctttctccgtgctacttaatggtagtcct |
26888818 |
T |
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| Q |
200 |
tgccagatattttccccgcaacatgggttgcgtcaaggggaccccttatcaccttatttatttattttatgtgcagaggtattctcaagtctcctcacca |
299 |
Q |
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||||||| ||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| | |
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| T |
26888817 |
tgccagactttttccctgcaacgtgggttacgtcaaggggaccccttatcaccttatttatttatttaatgtgcagaggtattctcaggtctcctcacta |
26888718 |
T |
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| Q |
300 |
aagcacaaggggagaa |
315 |
Q |
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| T |
26888717 |
aagcacaaggggagaa |
26888702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 5142374 - 5142652
Alignment:
| Q |
1 |
ttcattggatgaaaaagaaaaagcatgggaagaagggttatgtggggctaaaattggatatggt-aaagcatatgatcgcatagaatggagttttctaat |
99 |
Q |
| |
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||||||||||| || ||||||| ||| |||||||| ||||||||| | |||||||| |||| |||||||||||||| || |||||| |||||| || |
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| T |
5142374 |
ttcattggatgtggaaaaaaaagcttggtaagaagggatatgtggggatcaaattggacatggcgaaagcatatgatcgaattgaatgggattttctcat |
5142473 |
T |
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| Q |
100 |
tgttgtacttgattctatgggattttcgcaaaaatggcaaaatctagttttcaattgtatttcatctgtttctttctctatgctacttaatggtagtcct |
199 |
Q |
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| T |
5142474 |
tgttatcctaaaatctatgggtttttctcaaaaatggcaaaatcttgttcaaaattgtatttcttcggtttctttttctatgctgctcaatggtagcccg |
5142573 |
T |
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| Q |
200 |
tgccagatattttccccgcaacatgggttgcgtcaaggggaccccttatcaccttatttatttattttatgtgcagaggt |
279 |
Q |
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| T |
5142574 |
tgtcaaaatttctctccaaagagtggtttacgtcaaggggaccccttatcacc-tatttgtttattatttgtgcagaggt |
5142652 |
T |
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