View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15578_low_8 (Length: 308)
Name: NF15578_low_8
Description: NF15578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15578_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 24 - 241
Target Start/End: Complemental strand, 46378851 - 46378633
Alignment:
| Q |
24 |
tagtgcctttctgtctaggaccaaacattcgcacagctcccattaagaaaattaaccagt--------cactctaaagcccccacttgagttacaagcta |
115 |
Q |
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| T |
46378851 |
tagtgcctttctgtctaggaccaaacattcgc-------ccattaagaaaatgaaccagtggaacatgcactctaaatcccccacttgagttacaagcta |
46378759 |
T |
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| Q |
116 |
atgttatccaactcggcaagctgccatcattgaggggtttataaacgttcactttctttgtattctggtcgatgtgggatatactgatgctaagacttta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
46378758 |
atgttatccaactcggcaagctgccatcattgaggggtttataaacgttcactttctttgtattctggtcgatgtgtgatatactgatgctaagatttta |
46378659 |
T |
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| Q |
216 |
tccctctcgtgcatgttcaactctca |
241 |
Q |
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| T |
46378658 |
tccctctcgtgcatgttcaactctca |
46378633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 238 - 308
Target Start/End: Original strand, 26008374 - 26008444
Alignment:
| Q |
238 |
ctcattgtatgacttctccaacatcatcttgaataaagggtgagaaatatagcttgttggaaccacatgtc |
308 |
Q |
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| T |
26008374 |
ctcattgtatgacttctccaacaacatcttgaataaagggtgagaaagatagcttgttggaaccacatgtc |
26008444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 138
Target Start/End: Complemental strand, 37147508 - 37147463
Alignment:
| Q |
93 |
gcccccacttgagttacaagctaatgttatccaactcggcaagctg |
138 |
Q |
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| T |
37147508 |
gcccccacttgggttacaagttgatgttatccaactcggcaagctg |
37147463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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