View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15578_low_9 (Length: 300)
Name: NF15578_low_9
Description: NF15578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15578_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 52 - 285
Target Start/End: Complemental strand, 26446257 - 26446042
Alignment:
| Q |
52 |
gtttactctataatttaaaatttgttttgggaaagatgtcatatttgaagggcctccattctatgactttgatgaacataggcagtaagcatcagattaa |
151 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
26446257 |
gtttactctataatttaaaattagttttgggaaagatgtcatatttgaagggcctccattctatgactttgatgaacataggcggtaagcatcagattaa |
26446158 |
T |
|
| Q |
152 |
tgattaattgattatataactgctttgtagatgcgctacactttcattgttagcattccttgtcaccctgctttggatgtgttcaactttattgactgtt |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26446157 |
------------------actgctttgtagatgcgctacactttcattgttagcattccttgtcaccctgctttggatgtgttcaactttattgactgtt |
26446076 |
T |
|
| Q |
252 |
gatgtatgaatgatccttcatttatgtttatgat |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
26446075 |
gatgtatgaatgatccttcatttatgtttatgat |
26446042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 62 - 254
Target Start/End: Complemental strand, 42619013 - 42618821
Alignment:
| Q |
62 |
taatttaaaatttgttttgggaaagatgtcatatttgaagggcctccattctatgactttgatgaacataggcagtaagcatcagattaatgattaattg |
161 |
Q |
| |
|
|||||| ||||| ||||| ||||||||| ||| |||||||||||||| ||| |||||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
42619013 |
taattttaaattagttttaggaaagatgccatgtttgaagggcctcctttccatgactttgatgaacatagggagtaagcataagattaatgattaattg |
42618914 |
T |
|
| Q |
162 |
attatataactgctttgtagatgcgctacactttcattgttagcattccttgtcaccctgctttggatgtgttcaactttattgactgttgat |
254 |
Q |
| |
|
| |||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
42618913 |
agtataaaactgcttcgtagctgcgctacactttcattgttagcattccttgtcaccctgctttggatgtgttcaactttattcactgttgat |
42618821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University