View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15579_high_1 (Length: 428)

Name: NF15579_high_1
Description: NF15579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15579_high_1
NF15579_high_1
[»] chr6 (13 HSPs)
chr6 (1-428)||(11002433-11002860)
chr6 (1-427)||(10982204-10982630)
chr6 (1-414)||(11018828-11019241)
chr6 (1-427)||(10968254-10968680)
chr6 (71-427)||(11079575-11079931)
chr6 (2-129)||(11050229-11050356)
chr6 (355-418)||(18300125-18300188)
chr6 (106-144)||(4256408-4256446)
chr6 (106-140)||(4490156-4490190)
chr6 (106-140)||(4493252-4493286)
chr6 (106-140)||(4557422-4557456)
chr6 (106-140)||(4592528-4592562)
chr6 (107-144)||(4516619-4516656)
[»] chr7 (1 HSPs)
chr7 (106-140)||(3086717-3086751)
[»] scaffold0475 (1 HSPs)
scaffold0475 (106-142)||(3483-3519)
[»] chr2 (1 HSPs)
chr2 (97-141)||(24462263-24462307)


Alignment Details
Target: chr6 (Bit Score: 412; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 11002860 - 11002433
Alignment:
Q  1 caaagccaccttcatttcctcaatcaaaatcattttgttcaacctttgttctgcatacaaaggccatgcaatcataggcactccttcacaaatagcttcc 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11002860 caaagccaccttcatttcctcaaccaaaatcattttgttcaacctttgttctgcatacaaaggccatgcaatcataggcactccttcacaaatagcttcc 11002761  T
Q  101 aatactgagttccatccacaatgagtcacgaatccaccaactgattcgtgactcaatattgcatcttgtggtgcccaatttctcactaccattccctttt 200  Q
    || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  11002760 aacactgagttccatccacagtgagtcacgaatccaccaactgattcgtgactcaatattgcatcttgtggtgcccaatttctcaccaccattccctttt 11002661  T
Q  201 ccttcgtcctctccaaaaacccttctggcaacaagtcatccaaactaagttcctccaagtttgactcgctccttacaatccataagaatctttgctcact 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11002660 ccttcgtcctctccaaaaacccttctggcaacaagtcatccaaactaagttcctccaagtttgactcgctccttacaatccataagaatctttgctcact 11002561  T
Q  301 tttctccaatccaatagctatctcattcaactgagccttagaaaatctccccatgcttccaaaactcaaaaacacgacgctttgactaggttgcgagtca 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11002560 tttctccaatccaatagctatctcattcaactgagccttagaaaatctccccatgcttccaaaactcaaaaacacgacgctttgactaggttgcgagtca 11002461  T
Q  401 agccaaatcaaacacccattttcatctc 428  Q
    ||||||||||||||||||||||||||||    
T  11002460 agccaaatcaaacacccattttcatctc 11002433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 427
Target Start/End: Complemental strand, 10982630 - 10982204
Alignment:
Q  1 caaagccaccttcatttcctcaatcaaaatcattttgttcaacctttgttctgcatacaaaggccatgcaatcataggcactccttcacaaatagcttcc 100  Q
    |||||| |||||||| ||||||| ||||||||  ||||||| |||||||||||||||||| |||||||| | |||||||||||||||||| | |||||||    
T  10982630 caaagcaaccttcatctcctcaaccaaaatcaccttgttcagcctttgttctgcatacaatggccatgccaccataggcactccttcacatacagcttcc 10982531  T
Q  101 aatactgagttccatccacaatgagtcacgaatccaccaactgattcgtgactcaatattgcatcttgtggtgcccaatttctcactaccattccctttt 200  Q
    || || ||||||||||||||||| |||||||||||||| |  || || ||  | ||||||||| ||||||||||||||||||| || ||||||||| |||    
T  10982530 aacaccgagttccatccacaatgtgtcacgaatccaccgatcgagtcatgctttaatattgcaccttgtggtgcccaatttcttaccaccattccccttt 10982431  T
Q  201 ccttcgtcctctccaaaaacccttctggcaacaagtcatccaaactaagttcctccaagtttgactcgctccttacaatccataagaatctttgctcact 300  Q
    | || |||||||||||||||||||| || | ||| || ||||||||  | ||||| || |   |||||||||| | || ||| |||||||||||||||||    
T  10982430 cttttgtcctctccaaaaacccttcagggagcaactcgtccaaactttgctcctctaaatccaactcgctcctaataacccacaagaatctttgctcact 10982331  T
Q  301 tttctccaatccaatagctatctcattcaactgagccttagaaaatctccccatgcttccaaaactcaaaaacacgacgctttgactaggttgcgagtca 400  Q
    ||| ||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||| |||||||||| |||    
T  10982330 tttttccaatccaagtgctatctcattcaactgagccttagaaaatcttcccatgcttccaaaacttaacaacacgacgctttgaataggttgcgactca 10982231  T
Q  401 agccaaatcaaacacccattttcatct 427  Q
    |||||| | | ||||||||||||||||    
T  10982230 agccaacttagacacccattttcatct 10982204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 11019241 - 11018828
Alignment:
Q  1 caaagccaccttcatttcctcaatcaaaatcattttgttcaacctttgttctgcatacaaaggccatgcaatcataggcactccttcacaaatagcttcc 100  Q
    |||||||||||||||||| || |  |||| || | | || | ||||||||||||  ||||||||||||||||||| ||||| ||||||||||||||||||    
T  11019241 caaagccaccttcatttcatcgactaaaaccaatctatttagcctttgttctgcgaacaaaggccatgcaatcattggcaccccttcacaaatagcttcc 11019142  T
Q  101 aatactgagttccatccacaatgagtcacgaatccaccaactgattcgtgactcaatattgcatcttgtggtgcccaatttctcactaccattccctttt 200  Q
    || || ||||||||||||||||||||||| |||||||| || || |  ||||||||||| ||| ||||||| |||||||||||||| ||||||||||| |    
T  11019141 aacacggagttccatccacaatgagtcacaaatccacccacggagttatgactcaatatcgcaacttgtggggcccaatttctcacaaccattcccttgt 11019042  T
Q  201 ccttcgtcctctccaaaaacccttctggcaacaagtcatccaaactaagttcctccaagtttgactcgctccttacaatccataagaatctttgctcact 300  Q
    |||| ||||||||||||||||||||||| || || || |||||||| |  |  ||  ||| ||  || ||||| |||| ||| |||||||||||||||||    
T  11019041 cctttgtcctctccaaaaacccttctggaaataactcgtccaaactcaacttgtctgagtctggttcactcctaacaacccacaagaatctttgctcact 11018942  T
Q  301 tttctccaatccaatagctatctcattcaactgagccttagaaaatctccccatgcttccaaaactcaaaaacacgacgctttgactaggttgcgagtca 400  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||| ||||| ||||||||||||||||| |||||||||||     
T  11018941 tttctccaatccaatagctatctcattcaattgagccctagaaaatcttcccatgcttccaaagctcaacaacacgacgctttgacttggttgcgagtcg 11018842  T
Q  401 agccaaatcaaaca 414  Q
    |||||| |||||||    
T  11018841 agccaactcaaaca 11018828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 427
Target Start/End: Complemental strand, 10968680 - 10968254
Alignment:
Q  1 caaagccaccttcatttcctcaatcaaaatcattttgttcaacctttgttctgcatacaaaggccatgcaatcataggcactccttcacaaatagcttcc 100  Q
    |||||| |||||||| || |||| ||||||||  ||||||| ||||||||||||||| || ||||| || | ||||||||||||||||||||||||||||    
T  10968680 caaagcaaccttcatctcgtcaaccaaaatcaccttgttcagcctttgttctgcatataatggccacgccaccataggcactccttcacaaatagcttcc 10968581  T
Q  101 aatactgagttccatccacaatgagtcacgaatccaccaactgattcgtgactcaatattgcatcttgtggtgcccaatttctcactaccattccctttt 200  Q
    || || ||||||||||||||||| ||||||||||||||||  || || ||  | ||||||||| |||||||||||||||||||  | |||||||||||||    
T  10968580 aacaccgagttccatccacaatgtgtcacgaatccaccaatcgagtcatgctttaatattgcaccttgtggtgcccaatttcttgccaccattccctttt 10968481  T
Q  201 ccttcgtcctctccaaaaacccttctggcaacaagtcatccaaactaagttcctccaagtttgactcgctccttacaatccataagaatctttgctcact 300  Q
     ||| |||||||||||||||||||| || | ||| || ||||||||  | ||||| ||||   |||| ||||| |||| ||| |||||||||||||||||    
T  10968480 gctttgtcctctccaaaaacccttcaggaagcaactcgtccaaactttgctcctctaagtccaactcactcctaacaacccacaagaatctttgctcact 10968381  T
Q  301 tttctccaatccaatagctatctcattcaactgagccttagaaaatctccccatgcttccaaaactcaaaaacacgacgctttgactaggttgcgagtca 400  Q
    | | ||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||| |||||| ||     
T  10968380 tatttccaatccaagtgctatctcattcaactgagccttagaaaatcttcccatgcttccaaaacttaacaacacgacgctttgactagattgcgactcg 10968281  T
Q  401 agccaaatcaaacacccattttcatct 427  Q
    |||||| | | |||| |||||||||||    
T  10968280 agccaacttagacactcattttcatct 10968254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 71 - 427
Target Start/End: Complemental strand, 11079931 - 11079575
Alignment:
Q  71 atcataggcactccttcacaaatagcttccaatactgagttccatccacaatgagtcacgaatccaccaactgattcgtgactcaatattgcatcttgtg 170  Q
    ||||| || |||||||| |||||||||||||| || |||||||||||||||||||||||||| |||||||||||    || || | ||||| | ||||||    
T  11079931 atcattggaactccttcgcaaatagcttccaacacggagttccatccacaatgagtcacgaacccaccaactgagctatgtcttagtattgaaccttgtg 11079832  T
Q  171 gtgcccaatttctcactaccattcccttttccttcgtcctctccaaaaacccttctggcaacaagtcatccaaactaagttcctccaagtttgactcgct 270  Q
    ||||||| ||||| || ||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||| | |     |||||    
T  11079831 gtgcccagtttctaacaaccattcccttctcctttgtcctctccaaaaacccttctggcaacaactcatccaaacttagttcctccgactccatatcgct 11079732  T
Q  271 ccttacaatccataagaatctttgctcacttttctccaatccaatagctatctcattcaactgagccttagaaaatctccccatgcttccaaaactcaaa 370  Q
    ||| |||||||| ||||||||||| |||||||| ||||| ||||||||||||| ||| |  |||||||||||||||||||| | ||||||||| |||||     
T  11079731 cctaacaatccacaagaatctttgttcacttttttccaaaccaatagctatctgattaatttgagccttagaaaatctccctaagcttccaaagctcaac 11079632  T
Q  371 aacacgacgctttgactaggttgcgagtcaagccaaatcaaacacccattttcatct 427  Q
    || |||||||||||||  || || || || |||||| ||||||||||| ||| ||||    
T  11079631 aaaacgacgctttgacctggctgtgaatcgagccaactcaaacacccacttttatct 11079575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 2 - 129
Target Start/End: Complemental strand, 11050356 - 11050229
Alignment:
Q  2 aaagccaccttcatttcctcaatcaaaatcattttgttcaacctttgttctgcatacaaaggccatgcaatcataggcactccttcacaaatagcttcca 101  Q
    ||||||||||||||||| || |  |||| || | | || | ||||||||||||| ||||||||||||||||||| ||||| |||||| ||||||||||||    
T  11050356 aaagccaccttcatttcatcgactaaaaccaatctatttagcctttgttctgcaaacaaaggccatgcaatcattggcaccccttcataaatagcttcca 11050257  T
Q  102 atactgagttccatccacaatgagtcac 129  Q
    | || |||||||||||||||||| ||||    
T  11050256 acacggagttccatccacaatgaatcac 11050229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 355 - 418
Target Start/End: Original strand, 18300125 - 18300188
Alignment:
Q  355 gcttccaaaactcaaaaacacgacgctttgactaggttgcgagtcaagccaaatcaaacaccca 418  Q
    ||||||||| ||||||||||| || ||||||||||||||| |||  |||||| |||||||||||    
T  18300125 gcttccaaagctcaaaaacacaacactttgactaggttgcaagttgagccaactcaaacaccca 18300188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 4256446 - 4256408
Alignment:
Q  106 tgagttccatccacaatgagtcacgaatccaccaactga 144  Q
    |||||||||||| |||||||||| |||||||||||||||    
T  4256446 tgagttccatcctcaatgagtcaagaatccaccaactga 4256408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 140
Target Start/End: Complemental strand, 4490190 - 4490156
Alignment:
Q  106 tgagttccatccacaatgagtcacgaatccaccaa 140  Q
    ||||||||||||||||||||||| |||||||||||    
T  4490190 tgagttccatccacaatgagtcaagaatccaccaa 4490156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 140
Target Start/End: Original strand, 4493252 - 4493286
Alignment:
Q  106 tgagttccatccacaatgagtcacgaatccaccaa 140  Q
    ||||||||||||||||||||||| |||||||||||    
T  4493252 tgagttccatccacaatgagtcaagaatccaccaa 4493286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 140
Target Start/End: Original strand, 4557422 - 4557456
Alignment:
Q  106 tgagttccatccacaatgagtcacgaatccaccaa 140  Q
    ||||||||||||||||||||||| |||||||||||    
T  4557422 tgagttccatccacaatgagtcaagaatccaccaa 4557456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 140
Target Start/End: Original strand, 4592528 - 4592562
Alignment:
Q  106 tgagttccatccacaatgagtcacgaatccaccaa 140  Q
    ||||||||||||||||||||||| |||||||||||    
T  4592528 tgagttccatccacaatgagtcaagaatccaccaa 4592562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 144
Target Start/End: Original strand, 4516619 - 4516656
Alignment:
Q  107 gagttccatccacaatgagtcacgaatccaccaactga 144  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  4516619 gagttccatccacaatgagtcaagaatcctccaactga 4516656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 140
Target Start/End: Original strand, 3086717 - 3086751
Alignment:
Q  106 tgagttccatccacaatgagtcacgaatccaccaa 140  Q
    ||||||||||||||||||||||| |||||||||||    
T  3086717 tgagttccatccacaatgagtcaagaatccaccaa 3086751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 142
Target Start/End: Complemental strand, 3519 - 3483
Alignment:
Q  106 tgagttccatccacaatgagtcacgaatccaccaact 142  Q
    ||||||||||||||||||||| | |||||||||||||    
T  3519 tgagttccatccacaatgagttaagaatccaccaact 3483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 24462263 - 24462307
Alignment:
Q  97 ttccaatactgagttccatccacaatgagtcacgaatccaccaac 141  Q
    |||||| |||||||||||||||||||||||||  ||| |||||||    
T  24462263 ttccaacactgagttccatccacaatgagtcaaaaatgcaccaac 24462307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University