View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15579_high_1_N (Length: 337)
Name: NF15579_high_1_N
Description: NF15579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15579_high_1_N |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 35410053 - 35409717
Alignment:
| Q |
1 |
gaagattatccttatgcggctgatggactccccatatggactagtatagagaagttggtcaggacctgtgtgaaccattactacaaagatttaaatgccg |
100 |
Q |
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| T |
35410053 |
gaagattatccttatgcggctgatggactcctcatatggtctagtatagagaagttggtcaggacctatgtgaaccattactacaaagatttgaatgcca |
35409954 |
T |
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| Q |
101 |
tttcttctgacaatgaactccagtcctggtacaaagaattcatcaacatggggcaccctgatcataaaaatgctacctggtggcctaaactaaacccccc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35409953 |
tttcttctgacaatgaactccagtcctggtacaaagaattcatcaacatggggcaccctgatcataaaaatgctacctggtggcctaaactaaacacccc |
35409854 |
T |
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| Q |
201 |
tgaggatctcatctccttgcttaccaccattatctggactgtatcagcgcaacatgctgttctgaacttcagtcaatacccctatggtggatatgttcca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35409853 |
tgaggatctcatctccttgcttaccaccattatctggactgtatcagcgcaacatgctgtcttgaacttcagtcaatacccctatggtggatatgttcca |
35409754 |
T |
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| Q |
301 |
atccggccacaattaatgcgaaaattaattcctaatg |
337 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
35409753 |
atccggccacaattaatgcgaaaattaattcctaatg |
35409717 |
T |
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