View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1558-INSERTION-1 (Length: 201)
Name: NF1558-INSERTION-1
Description: NF1558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1558-INSERTION-1 |
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| [»] chr8 (9 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 7 - 201
Target Start/End: Original strand, 1963046 - 1963240
Alignment:
| Q |
7 |
agttctttctccaatgtgttgaaaaattccgtctttttgatggtgttctaattaatagcttcctggaaattgaaaagggtcctatagaagcaatgacaga |
106 |
Q |
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| T |
1963046 |
agttctttctccaatgtgttgaaaaattccgtctttttgatggtgttcttattaatagcttcctggaaattgaaaagggtcctatagaagcaatgacaga |
1963145 |
T |
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| Q |
107 |
cgaaggaagtgaaaaccttcttgtgtatgctgttggacccattatccaaacactaacaacatctggtgatgatgctaataagtttgagtgtctga |
201 |
Q |
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| T |
1963146 |
tgaaggaagtgaaaaccttcttgtgtatgctgttggacccattatccaaacactaacaacatctggtgatgatgctaataagtttgagtgtctga |
1963240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 15 - 200
Target Start/End: Complemental strand, 2015375 - 2015190
Alignment:
| Q |
15 |
ctccaatgtgttgaaaaattccgtctttttgatggtgttctaattaatagcttcctggaaattgaaaagggtcctatagaagcaatgacagacgaaggaa |
114 |
Q |
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| T |
2015375 |
ctccaaggtgttgaaaaattgcgtctttttgatggtattcttattaatagtttcatagaaatcgaaaacggtcctatagaagcactgacagacgaaggaa |
2015276 |
T |
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| Q |
115 |
gtgaaaaccttcttgtgtatgctgttggacccattatccaaacactaacaacatctggtgatgatgctaataagtttgagtgtctg |
200 |
Q |
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| T |
2015275 |
gtgaaaaccttcttgtgtatgctgttggacccattatccaaacactaacaacatctggtgatgatgctaataagtttgaatgtctg |
2015190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 200
Target Start/End: Original strand, 2432951 - 2433128
Alignment:
| Q |
23 |
tgttgaaaaattccgtctttttgatggtgttctaattaatagcttcctggaaattgaaaagggtcctatagaagcaatgacagacgaaggaagtgaaaac |
122 |
Q |
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| T |
2432951 |
tgttaaaaaataccgttttgttgatggtgttcttgttaatagcttcttagaaatggaaaggggtcctataaaagcactgacagatgaaggaagtgaaaat |
2433050 |
T |
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| Q |
123 |
cttcttgtgtatgctgttggacccattatccaaacactaacaacatctggtgatgatgctaataagtttgagtgtctg |
200 |
Q |
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| T |
2433051 |
cctcttgtgtatcctgttggacccatcatccagacaataacaagttctgacgatgatgctaatatgttggagtgtctg |
2433128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 22 - 185
Target Start/End: Complemental strand, 2018751 - 2018588
Alignment:
| Q |
22 |
gtgttgaaaaattccgtctttttgatggtgttctaattaatagcttcctggaaattgaaaagggtcctatagaagcaatgacagacgaaggaagtgaaaa |
121 |
Q |
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| T |
2018751 |
gtgttgaaaaattccgtctttttgatggtattcttattaatagcttcctagaaattgaaaaaggtcctatagaagcactcacagaagacagaagtggcaa |
2018652 |
T |
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| Q |
122 |
ccttcttgtgtatgctgttggacccattatccaaacactaacaacatctggtgatgatgctaat |
185 |
Q |
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| T |
2018651 |
ccctgatgtttatgctgttggaccaattatccaaacgccaaccaaatcgggtgatgatgataat |
2018588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 44 - 153
Target Start/End: Complemental strand, 2004952 - 2004843
Alignment:
| Q |
44 |
tgatggtgttctaattaatagcttcctggaaattgaaaagggtcctatagaagcaatgacagacgaaggaagtgaaaaccttcttgtgtatgctgttgga |
143 |
Q |
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| T |
2004952 |
tgatggtgttcttgttaatagcttcctagaaatggagatgggtcctataagtgcaatgaaagatgaaggaagtgaaaaccctcctgtgtatcctgttgga |
2004853 |
T |
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| Q |
144 |
cccattatcc |
153 |
Q |
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| T |
2004852 |
cccatcatcc |
2004843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 185
Target Start/End: Complemental strand, 2008332 - 2008191
Alignment:
| Q |
44 |
tgatggtgttctaattaatagcttcctggaaattgaaaagggtcctatagaagcaatgacagacgaaggaagtgaaaaccttcttgtgtatgctgttgga |
143 |
Q |
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| T |
2008332 |
tgatggtgttcttgttaatagcttcctagaaatagagatgggtcctctaagtgcaatgaaagaggagggaggtgacaaccctccagtgtatcctgttgga |
2008233 |
T |
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| Q |
144 |
cccattatccaaacactaacaacatctggtgatgatgctaat |
185 |
Q |
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| T |
2008232 |
cctattatcgaaacagaaacaaaatctggtgatgatgctaat |
2008191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 44 - 185
Target Start/End: Original strand, 1968683 - 1968824
Alignment:
| Q |
44 |
tgatggtgttctaattaatagcttcctggaaattgaaaagggtcctatagaagcaatgacagacgaaggaagtgaaaaccttcttgtgtatgctgttgga |
143 |
Q |
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| T |
1968683 |
tgatggtgtttttgttaatagcttcctggaattggagatgggacctataagtgcaatgaaagaggagggaagtgacaaccctccagtgtatcctgttgga |
1968782 |
T |
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| Q |
144 |
cccattatccaaacactaacaacatctggtgatgatgctaat |
185 |
Q |
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| T |
1968783 |
ccaattatccaaacagaaacaagttcaggtgatgatgctaat |
1968824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 44 - 185
Target Start/End: Complemental strand, 2011947 - 2011806
Alignment:
| Q |
44 |
tgatggtgttctaattaatagcttcctggaaattgaaaagggtcctatagaagcaatgacagacgaaggaagtgaaaaccttcttgtgtatgctgttgga |
143 |
Q |
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| T |
2011947 |
tgatggtgttcttgttaatagcttcttagaaatggaaatgggacctataaatgcattgacagaggaaggaagtggcaacccttctgtctatcctgttgga |
2011848 |
T |
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| Q |
144 |
cccattatccaaacactaacaacatctggtgatgatgctaat |
185 |
Q |
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| T |
2011847 |
cccatcatccagacagtaacaggttctgttgatgatgctaat |
2011806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 44 - 148
Target Start/End: Original strand, 1964747 - 1964851
Alignment:
| Q |
44 |
tgatggtgttctaattaatagcttcctggaaattgaaaagggtcctatagaagcaatgacagacgaaggaagtgaaaaccttcttgtgtatgctgttgga |
143 |
Q |
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| T |
1964747 |
tgatggtgttcttgttaatagcttcttagaaatggaaatgggacctataaaagcaccgacagaggaaggaagtggcaacccttctgtgtatcctgttgga |
1964846 |
T |
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| Q |
144 |
cccat |
148 |
Q |
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| T |
1964847 |
cccat |
1964851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 57 - 158
Target Start/End: Original strand, 5902275 - 5902376
Alignment:
| Q |
57 |
attaatagcttcctggaaattgaaaagggtcctatagaagcaatgacagacgaaggaagtgaaaaccttcttgtgtatgctgttggacccattatccaaa |
156 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||| |||| | |||||| || |||||||||||||||||| |
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| T |
5902275 |
attaatagcttcctggaaattgaaaaaggtcctatagaagcactgacagaagaaggaagtggtaaccctgctgtgtaccctattggacccattatccaaa |
5902374 |
T |
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| Q |
157 |
ca |
158 |
Q |
| |
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|| |
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| T |
5902375 |
ca |
5902376 |
T |
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