View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1558-INSERTION-3 (Length: 607)
Name: NF1558-INSERTION-3
Description: NF1558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1558-INSERTION-3 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 8 - 607
Target Start/End: Original strand, 37293379 - 37293964
Alignment:
| Q |
8 |
tataccatatatctttccttaagtatgcatttcaaggatcattcaagaatgaatttgaagggttaaaagttgctgtggggaccaacattgtgagtggtag |
107 |
Q |
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| T |
37293379 |
tataccatatatctttccttaagtatgcatttcaaggatcattcaagaatgaatttgaagggttaaaagttgatgtggggaccaacattgtgagtggtag |
37293478 |
T |
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| Q |
108 |
agaaatattgaatgataaatggcatgttgaaattggtcactctaagtgggttgatcttgctatcatgtttggcatgattgtgttgtatagagttctattc |
207 |
Q |
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| T |
37293479 |
agaaatattgaatgataaatggcatgttgaaattggtcactctaagtgggttgatcttgctatcatgtttggcatgattgtgttgtatagagttctattc |
37293578 |
T |
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| Q |
208 |
ttggtcatcaccaagagcaaggagaagttgaagccaagtggtccttaagcaataaattttcacatgtcaatgatcaatagaccaaggagtaaataaatat |
307 |
Q |
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| T |
37293579 |
ttggtcatcaccaagagcaaggagaagttgaagccaagtggtccttaagcaataaattttcacatgtcaatgatcaatagaccaaggagtaaataaatat |
37293678 |
T |
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| Q |
308 |
tcaaattattactttctgaattctgacaaatgtaatggtagatatatataagttgttgaaaatgctaaatcttgtctttcctcaacaacaatnnnnnnng |
407 |
Q |
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| T |
37293679 |
tcaaattattactttctgaattctgacaaatgtaatggtagatatatataagttgttgaaaatgctaaatcttgtctttcctcaacaacaa-aaagaaaa |
37293777 |
T |
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| Q |
408 |
atgccaaatcttgtattgatttttaaaaataataatagatatttgtcgcattgatatttctttatcaatcaattaatatattgcatagatggcagaccat |
507 |
Q |
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| T |
37293778 |
atgccaaatcttgtcttgattt---aaaaaaataatagatatttgtcgcattgatatttctttatcaatcaataaatat----------tggcagaccat |
37293864 |
T |
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| Q |
508 |
ttacttgcagtggttgtgacttttatattcgaagttcatccgttgaaatgttatataagaaattttcattagnnnnnnntgtatgtcacaaaacatatac |
607 |
Q |
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| T |
37293865 |
ttacctgcagtagttgtgagttttatattcaaagttcatccgttgaaaggttacataagaaattttcattagaaaaaaatggatgtcacaaaacatatac |
37293964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 121 - 235
Target Start/End: Original strand, 37301063 - 37301177
Alignment:
| Q |
121 |
gataaatggcatgttgaaattggtcactctaagtgggttgatcttgctatcatgtttggcatgattgtgttgtatagagttctattcttggtcatcacca |
220 |
Q |
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| T |
37301063 |
gatatatggcatgtgcaaataggtcactcgaagtgggttgatctttttatcatgtttggtatgattgttgtttatcgagttctattcttggtcatcaata |
37301162 |
T |
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| Q |
221 |
agagcaaggagaagt |
235 |
Q |
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| T |
37301163 |
aggtcaaggagaagt |
37301177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 37300961 - 37301003
Alignment:
| Q |
31 |
tatgcatttcaaggatcattcaagaatgaatttgaagggttaa |
73 |
Q |
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| T |
37300961 |
tatgcttttcaaggatccttcaagaatgaatttgaaggcttaa |
37301003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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