View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1558-INSERTION-4 (Length: 539)
Name: NF1558-INSERTION-4
Description: NF1558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1558-INSERTION-4 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 493; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 7 - 539
Target Start/End: Original strand, 3084224 - 3084756
Alignment:
| Q |
7 |
acttctgatgtcgagtggaattggagcagcacatcaccttagggaacacaacatcagtgtagtgttagatcaacctttggtaggacaaggaatgtcagat |
106 |
Q |
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| T |
3084224 |
acttctgatgttgagtggaattggagcaggacatcaccttagggaacacaacatcagtgtagtgttagatcaacctttggtaggacaaggaatgtcagat |
3084323 |
T |
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| Q |
107 |
aatccaatgaacgctgtttatgtcccgtctccttcccccgtagaggtctccctcatttcagttgttggcattaccaacttcggcagctacattgaagccg |
206 |
Q |
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| T |
3084324 |
aatccaatgaacgctgtttatgtcccgtctccttcccccgtagaggtctccctcatttcagttgttggcattaccaacttcggcagctacattgaagccg |
3084423 |
T |
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| Q |
207 |
tgagcggtgcagccttcaccagtaatggaagcgagttcaaaatgtttactcccaaggtacatttaacaatttgtgttcgatctaaatcaattcttacaaa |
306 |
Q |
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| T |
3084424 |
tgagcggtgcagccttcaccagtaatggaagcgagttcacaatgtttactcccaaggtacatttaacaatttgtgttccatctaaatcaattcttacaaa |
3084523 |
T |
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| Q |
307 |
ctagtgcgatatgttttcgacttatgaatactttttcaagacatggtacattttcttttaggaagacatactacatttactgcaaagctttcaaaacaac |
406 |
Q |
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| T |
3084524 |
ctagtgcgatatgtcttcgacttattaatactttttcaagacatggtacattttcttttaggaagacatactacatttactgcaaagctttcaaaacaac |
3084623 |
T |
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| Q |
407 |
atgcaattacacttgctaagtcacacccaactcaatttattatgtaaaagttaaaacccaaaccaaataaacatcaatatggcctagctaacaaataaca |
506 |
Q |
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| T |
3084624 |
atgcaattgcacttgctaagttacacccaactcaatttattatgtaaaagttaaaatccaaaccaaataaacatcaatatggcctagctaacaaataaca |
3084723 |
T |
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| Q |
507 |
atattacactatttttgggaccgactcccctgc |
539 |
Q |
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| T |
3084724 |
atattacactatttttgggaccgactctcctgc |
3084756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 7 - 357
Target Start/End: Original strand, 3093104 - 3093455
Alignment:
| Q |
7 |
acttctgatgtcgagtggaattggagcagcacatcaccttagggaacacaacatcagtgtagtgttagatcaacctttggtaggacaaggaatgtcagat |
106 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| | |||| |||||||||||||||||| ||||||| || ||||||||||||||||||||| |
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| T |
3093104 |
acttctgatgttgagtggaattggagcagcacatcaccttaagcaacataacatcagtgtagtgttacatcaaccatttgtaggacaaggaatgtcagat |
3093203 |
T |
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| Q |
107 |
aatccaatgaacgctgtttatgtcccgtctccttcccccgtagaggtctccctcatttcagttgttggcattaccaacttcggcagctacattgaagccg |
206 |
Q |
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|| ||||||||| ||||||||||||| |||||||| || |||||||| ||||||||||| |||||||||||||||| ||| |||||||| |||||||||| |
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| T |
3093204 |
aacccaatgaactctgtttatgtcccatctccttctccggtagaggtttccctcatttctgttgttggcattaccagctttggcagctatattgaagccg |
3093303 |
T |
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| Q |
207 |
tgagcggtgcagccttcaccagtaatggaagcgagttcaaaatgtttactcccaaggtacatttaacaatttgtgttcgatctaaatcaattcttacaaa |
306 |
Q |
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||||| ||| | |||||| || | ||| || ||| ||||||| ||||| |||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
3093304 |
ctagcggcgcaacattcaccggttctcaaagagacttcggaatgttttctcccgaggtacattttaaaatttgtgttcgatctaaatcaattcttacaaa |
3093403 |
T |
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| Q |
307 |
ctagtgcgatatgttttcgacttatga-atactttttcaagacatggtacat |
357 |
Q |
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| T |
3093404 |
ctagtgcgatatgtctttgacctatgacttactttttaaagacatgttacat |
3093455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 45938961 - 45939005
Alignment:
| Q |
74 |
gatcaacctttggtaggacaaggaatgtcagataatccaatgaac |
118 |
Q |
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| T |
45938961 |
gatcagcctttggtaggtcaagggatggcagataatccaatgaac |
45939005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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