View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1558-INSERTION-6 (Length: 461)
Name: NF1558-INSERTION-6
Description: NF1558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1558-INSERTION-6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 8 - 461
Target Start/End: Original strand, 26045739 - 26046189
Alignment:
| Q |
8 |
caattttattgtgttctccaggatgtgatacctttatggaaagaagttgaattctacaaggactaccaaaagaaattgaaagcatcttttggtgatgaga |
107 |
Q |
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| T |
26045739 |
caattttattgtgttctccaggatgtgatacctttatggaaagaagttgaattctacaaggactaccaaaagaaattgaaagcatcttttggtgatgaga |
26045838 |
T |
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| Q |
108 |
aggctaaagaaataattagggagtctttatatttggttagcataggaacaaatgattttcttgagaactattacactcagcttgaaagaaggatggaatg |
207 |
Q |
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| T |
26045839 |
aggctaaagaaataattagggagtctttatatttggttagcataggaacaaatgattttcttgagaactattacactcagcttgaaagaaggatggaata |
26045938 |
T |
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| Q |
208 |
taaaactgttcaagaatatgaagattttttaattgttcttgctgaaaatttccttagagaaatttatgacctaggagcaaggaaaatttctctgacaggg |
307 |
Q |
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| T |
26045939 |
taaaactgttcaagaatatgaagattttttaattgttcttgctgaaaatttccttagagaaatttatgacctaggagcaaggaaaatttctctgaca-gg |
26046037 |
T |
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| Q |
308 |
gttacctcccatggggtgtctgccacttgaaaggnccataaantattatgggtctacatagttgtgtggattattacaatggtgtagctttagagttcaa |
407 |
Q |
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| T |
26046038 |
gttacctcccatggggtgtctgccacttgaaagggccataaa-tattatgggtctacatagttgtgtggattattacaatgatgtagctttagagttcaa |
26046136 |
T |
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| Q |
408 |
tgcaaaattgggatgcttggtatcaaagttgaataaaggacctccatggatttc |
461 |
Q |
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| T |
26046137 |
tgcaaaattgggatgcttagtatcaaagttgaat-aaggacctccatggatttc |
26046189 |
T |
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Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 380 - 443
Target Start/End: Complemental strand, 15952333 - 15952270
Alignment:
| Q |
380 |
attacaatggtgtagctttagagttcaatgcaaaattgggatgcttggtatcaaagttgaataa |
443 |
Q |
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||||||||| ||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
15952333 |
attacaatgatgtagctttggagttcaatgcaaatttgggatgcttagtatcaaagttgaataa |
15952270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 380 - 443
Target Start/End: Complemental strand, 10032509 - 10032446
Alignment:
| Q |
380 |
attacaatggtgtagctttagagttcaatgcaaaattgggatgcttggtatcaaagttgaataa |
443 |
Q |
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| T |
10032509 |
attacaatgatgtagctttggagttcaatgcaaatttgggatgcttagtatcaaagttgaataa |
10032446 |
T |
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