View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15580_low_1 (Length: 608)

Name: NF15580_low_1
Description: NF15580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15580_low_1
NF15580_low_1
[»] chr6 (8 HSPs)
chr6 (18-576)||(28138008-28138567)
chr6 (367-545)||(12938681-12938860)
chr6 (382-545)||(33694835-33694998)
chr6 (114-185)||(6982835-6982906)
chr6 (116-179)||(10501975-10502038)
chr6 (366-409)||(12466438-12466481)
chr6 (422-496)||(14532057-14532131)
chr6 (263-343)||(30587503-30587579)
[»] chr4 (13 HSPs)
chr4 (366-598)||(42976369-42976602)
chr4 (367-545)||(27292985-27293164)
chr4 (373-545)||(4919059-4919232)
chr4 (468-557)||(20133410-20133499)
chr4 (468-566)||(55919365-55919463)
chr4 (468-566)||(28679508-28679606)
chr4 (475-548)||(45989606-45989679)
chr4 (115-189)||(39735815-39735889)
chr4 (95-180)||(2048966-2049051)
chr4 (114-183)||(3958945-3959014)
chr4 (475-548)||(42069042-42069115)
chr4 (475-548)||(47031455-47031528)
chr4 (468-521)||(15531234-15531287)
[»] chr3 (13 HSPs)
chr3 (366-576)||(31658787-31658998)
chr3 (367-545)||(50650391-50650570)
chr3 (382-566)||(12938455-12938640)
chr3 (468-569)||(5232946-5233047)
chr3 (468-569)||(20104322-20104423)
chr3 (468-557)||(39833218-39833307)
chr3 (382-496)||(29833329-29833444)
chr3 (248-362)||(4292984-4293095)
chr3 (367-542)||(33216657-33216833)
chr3 (468-539)||(36950163-36950234)
chr3 (468-521)||(29703559-29703612)
chr3 (468-521)||(53282294-53282347)
chr3 (114-158)||(11536252-11536296)
[»] chr5 (10 HSPs)
chr5 (367-545)||(30624903-30625082)
chr5 (382-545)||(41413442-41413606)
chr5 (382-566)||(1828466-1828651)
chr5 (382-566)||(40313931-40314116)
chr5 (367-542)||(31482071-31482247)
chr5 (98-185)||(33417416-33417503)
chr5 (468-566)||(24788302-24788400)
chr5 (468-521)||(39884696-39884749)
chr5 (120-189)||(31610042-31610111)
chr5 (95-134)||(15867381-15867420)
[»] chr1 (8 HSPs)
chr1 (367-545)||(27286203-27286382)
chr1 (367-545)||(52385813-52385992)
chr1 (383-565)||(39241614-39241793)
chr1 (468-566)||(12981521-12981619)
chr1 (468-566)||(45348246-45348344)
chr1 (116-189)||(42080685-42080758)
chr1 (475-544)||(45325635-45325704)
chr1 (136-183)||(43403894-43403941)
[»] chr2 (18 HSPs)
chr2 (367-545)||(14096295-14096474)
chr2 (455-576)||(18977078-18977200)
chr2 (468-569)||(37078947-37079048)
chr2 (468-566)||(15330735-15330833)
chr2 (468-566)||(37261675-37261773)
chr2 (468-566)||(14810093-14810191)
chr2 (468-566)||(16429864-16429962)
chr2 (468-566)||(17690604-17690702)
chr2 (120-185)||(21949895-21949960)
chr2 (468-539)||(33755075-33755146)
chr2 (468-521)||(7089225-7089278)
chr2 (136-189)||(41411516-41411569)
chr2 (367-417)||(18977214-18977264)
chr2 (136-183)||(40275158-40275205)
chr2 (120-189)||(9446973-9447042)
chr2 (114-187)||(14555887-14555960)
chr2 (95-171)||(18559723-18559799)
chr2 (114-186)||(38346691-38346763)
[»] chr7 (13 HSPs)
chr7 (367-545)||(19436711-19436890)
chr7 (367-541)||(29833948-29834123)
chr7 (468-569)||(47327942-47328043)
chr7 (381-502)||(29258440-29258562)
chr7 (468-566)||(45972423-45972521)
chr7 (95-185)||(8308208-8308298)
chr7 (468-552)||(29243380-29243462)
chr7 (475-548)||(6442633-6442706)
chr7 (95-180)||(38836121-38836206)
chr7 (479-548)||(34094118-34094187)
chr7 (114-185)||(49094543-49094614)
chr7 (114-186)||(30559359-30559431)
chr7 (116-179)||(25862613-25862676)
[»] chr8 (9 HSPs)
chr8 (382-542)||(13802682-13802843)
chr8 (468-566)||(531684-531782)
chr8 (95-185)||(6596498-6596588)
chr8 (468-552)||(30945445-30945527)
chr8 (418-548)||(23613574-23613705)
chr8 (468-539)||(3879472-3879543)
chr8 (114-183)||(19168178-19168247)
chr8 (95-180)||(40715928-40716013)
chr8 (421-542)||(23614215-23614338)
[»] scaffold0166 (1 HSPs)
scaffold0166 (468-566)||(30685-30783)
[»] scaffold0141 (1 HSPs)
scaffold0141 (117-183)||(16533-16599)
[»] scaffold0060 (1 HSPs)
scaffold0060 (114-183)||(18923-18991)


Alignment Details
Target: chr6 (Bit Score: 475; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 18 - 576
Target Start/End: Complemental strand, 28138567 - 28138008
Alignment:
Q  18 tatactaatggagagcatgattctagccttgtctgtctggcaacaaccaagaacnnnnnnnnnnnnnnnnnnnnnnntagacaagtttcaccgaagagca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||                       |||||||||||||||||||||||    
T  28138567 tatactaatggagagcatgattctagccttgtctgtctggcaacaaccaagaacaaaaaggaaaaaaagcagaaaaatagacaagtttcaccgaagagca 28138468  T
Q  118 caagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgactgtatttgttgtttgacagtttcctttcttt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28138467 caagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgactgtatttgttgtttgacagtttcctttcttt 28138368  T
Q  218 ggtttactagcaaagctatgcttctcgccctttcttttatcagagacattttggtctccatttttagattctctcattaatactgtaatagggtgcagac 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28138367 ggtttactagcaaagctatgcttctcgccctttcttttatcagagacattttggtctccatttttagattctctcattaatactgtaatagggtgcagac 28138268  T
Q  318 ccactcctgccgattttaatgcatttcttagcctttatcaaaaaa-gtacagtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgta 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28138267 ccactcctgccgattttaatgcatttcttagcctttatcaaaaaaggtacagtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgta 28138168  T
Q  417 ggacaaattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcatgatcttaaaggttagatttacttggtctatatattattg 516  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  28138167 ggacaaattttaatatggaccacttgctccatatgtcccatcatggacaagtttatttcatgatcttaaaggttagatttacttggtctctatattattg 28138068  T
Q  517 tggtacgtcatctacacatgatttttcttctagtaccaattcgctctccttttatttccc 576  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28138067 tggtacgtcatctacacatgatttttcttctagtaccaattcgctctccttttatttccc 28138008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 367 - 545
Target Start/End: Original strand, 12938681 - 12938860
Alignment:
Q  367 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtagg-acaaattttaatatggaccacttgctccatatgtcccaccatggaca 465  Q
    |||||||||||||| ||||||| |||| |||  |||||||||||||||| || ||||||||||||||||| |||||||| ||||||| ||||||| ||||    
T  12938681 agtcgtttaattcaaccaatcagattttaagcgatgacacgtcagatgttgggacaaattttaatatggatcacttgcttcatatgttccaccatagaca 12938780  T
Q  466 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 545  Q
    |||||||||||  ||||||| ||||||||||  ||||||| ||| ||||||||||||  | |||||||||||||||||||    
T  12938781 agtttatttcaaaatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttctt 12938860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 382 - 545
Target Start/End: Original strand, 33694835 - 33694998
Alignment:
Q  382 ccaatcaaatttcaagtcatgacacgtcagatgtaggacaaattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcatgatc 481  Q
    ||||||| |||| |||| ||||||||| ||||   ||| ||||||||||||||| |||||||||||||||| ||| ||| ||||| ||||||||||||||    
T  33694835 ccaatcagattttaagtgatgacacgttagataatggaaaaattttaatatggatcacttgctccatatgttccatcatagacaaatttatttcatgatc 33694934  T
Q  482 ttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 545  Q
    ||||  |||||||||| |||| || ||||||||||||||||  | |||||| ||||||||||||    
T  33694935 ttaacagttagatttatttggcctctatattattgtggtacaccctctacatatgatttttctt 33694998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 185
Target Start/End: Original strand, 6982835 - 6982906
Alignment:
Q  114 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtga 185  Q
    |||| ||||||| |||||||| |||||||||| |||||||||||| ||||||| |||| |||||||||||||    
T  6982835 agcataagtagtgagcacatacaaactcgttcaaaaaagggtgtaatcaaaagcaatcttaaatatttgtga 6982906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 10502038 - 10501975
Alignment:
Q  116 cacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatat 179  Q
    ||||||||||||||||||  |||||||||| |||||||||||| | ||||| ||||| ||||||    
T  10502038 cacaagtagtaagcacatccaaactcgttccaaaaagggtgtaataaaaagcaatcccaaatat 10501975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 366 - 409
Target Start/End: Original strand, 12466438 - 12466481
Alignment:
Q  366 cagtcgtttaattcagccaatcaaatttcaagtcatgacacgtc 409  Q
    ||||||||||||||| |||||||||||||||||||| |||||||    
T  12466438 cagtcgtttaattcaaccaatcaaatttcaagtcataacacgtc 12466481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 496
Target Start/End: Complemental strand, 14532131 - 14532057
Alignment:
Q  422 aattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcatgatcttaaaggttagattt 496  Q
    |||| ||||||| || |||||||| ||||||  ||||||||||| ||||| |||| |||||||| ||||||||||    
T  14532131 aattctaatatgaacaacttgctctatatgtttcaccatggacaggtttacttcacgatcttaatggttagattt 14532057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 263 - 343
Target Start/End: Original strand, 30587503 - 30587579
Alignment:
Q  263 acattttggtctccatttttagattctctcattaatactgtaatagggtgcagacccactcctgccga-ttttaatgcattt 343  Q
    |||||||||||| | ||||||||||||||||||     ||||||||||||||| |||||||||| | | |||||||||||||    
T  30587503 acattttggtctacttttttagattctctcatt-----tgtaatagggtgcaggcccactcctgactatttttaatgcattt 30587579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 4e-64; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 366 - 598
Target Start/End: Original strand, 42976369 - 42976602
Alignment:
Q  366 cagtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtaggacaaattttaatatggaccacttgctccatatgtcccaccatggaca 465  Q
    ||||||||||||||| ||||||| ||||||||  ||||||||||| |||||| | ||||||||||||||| ||||||||||||| |||||||||| ||||    
T  42976369 cagtcgtttaattcaaccaatcagatttcaagagatgacacgtcacatgtagaataaattttaatatggatcacttgctccataagtcccaccatagaca 42976468  T
Q  466 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcc 565  Q
    ||||| ||| |||||||||| ||||||||||||||||||| ||| ||| ||||||||  ||||||||||||||||||||||||||| |||||| ||||||    
T  42976469 agtttcttttatgatcttaacggttagatttacttggtctctatgttaatgtggtacaccatctacacatgatttttcttctagtatcaattctctctcc 42976568  T
Q  566 t-tttatttcccnnnnnnnatttatccatattct 598  Q
    | ||||||||||       |||||||||||||||    
T  42976569 tctttatttccctttctttatttatccatattct 42976602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 367 - 545
Target Start/End: Original strand, 27292985 - 27293164
Alignment:
Q  367 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtagg-acaaattttaatatggaccacttgctccatatgtcccaccatggaca 465  Q
    |||||||||||||||||||||| |||||||| |||||||||||| |||| || ||||||| ||||||||| |||||| | ||||||| ||||||| ||||    
T  27292985 agtcgtttaattcagccaatcagatttcaagccatgacacgtcatatgttgggacaaattctaatatggatcacttgtttcatatgttccaccatagaca 27293084  T
Q  466 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 545  Q
    ||||||||||| |||||||| ||||||||||  ||||||| ||| ||||||||||||  | |||||||||||||||||||    
T  27293085 agtttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttctt 27293164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 373 - 545
Target Start/End: Original strand, 4919059 - 4919232
Alignment:
Q  373 ttaattcagccaatcaaatttcaagtcatgacacgtcagatgtagg-acaaattttaatatggaccacttgctccatatgtcccaccatggacaagttta 471  Q
    |||||||||||||||| |||||||| ||||||||||||||||| || ||||||| ||||||||| |||||| | ||||||| ||||||| ||||||||||    
T  4919059 ttaattcagccaatcagatttcaagccatgacacgtcagatgttgggacaaattctaatatggatcacttgtttcatatgttccaccatagacaagttta 4919158  T
Q  472 tttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 545  Q
    ||||| |||||||| ||||||||||  ||||||| |||  |||||||||||    |||||||||||||||||||    
T  4919159 tttcaagatcttaatggttagatttgtttggtctctatgatattgtggtacacgctctacacatgatttttctt 4919232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 468 - 557
Target Start/End: Original strand, 20133410 - 20133499
Alignment:
Q  468 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaatt 557  Q
    ||||||||||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||    
T  20133410 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaatt 20133499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 468 - 566
Target Start/End: Complemental strand, 55919463 - 55919365
Alignment:
Q  468 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 566  Q
    ||||||||||||| ||||  |||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  55919463 tttatttcatgattttaatagttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 55919365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 468 - 566
Target Start/End: Original strand, 28679508 - 28679606
Alignment:
Q  468 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 566  Q
    ||||||| ||||||||||  |||| ||||||||| ||| ||| |||||||||||   |||||||||||||||||||||||||||||||||  |||||||    
T  28679508 tttattttatgatcttaatagttaaatttacttgatctctatgttattgtggtataccatctacacatgatttttcttctagtaccaattttctctcct 28679606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 475 - 548
Target Start/End: Complemental strand, 45989679 - 45989606
Alignment:
Q  475 catgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttcta 548  Q
    ||||||||||| ||||||||||| ||||||| ||| |||||||||||   ||||||||||||||||||||||||    
T  45989679 catgatcttaacggttagatttaattggtctctatgttattgtggtataccatctacacatgatttttcttcta 45989606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 115 - 189
Target Start/End: Original strand, 39735815 - 39735889
Alignment:
Q  115 gcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgactgt 189  Q
    ||||||||||| |||||||| |||||||||| || ||||||||| ||||||| ||||| |||||| |||||||||    
T  39735815 gcacaagtagtgagcacatacaaactcgttccaagaagggtgtaatcaaaagcaatccaaaatatatgtgactgt 39735889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 95 - 180
Target Start/End: Original strand, 2048966 - 2049051
Alignment:
Q  95 tagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatt 180  Q
    ||||||||||||| | || |||||||||||| |||| ||| |||||||||| |||||||||||  ||||||| ||||| |||||||    
T  2048966 tagacaagtttcatcaaaaagcacaagtagtgagcatatacaaactcgttccaaaaagggtgttatcaaaagcaatcccaaatatt 2049051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 3959014 - 3958945
Alignment:
Q  114 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgt 183  Q
    ||||||| |||| |||||||| ||||||||||||||||||||||  ||||||| ||||| ||||||||||    
T  3959014 agcacaaatagtgagcacatacaaactcgttctaaaaagggtgtcatcaaaagcaatcccaaatatttgt 3958945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 475 - 548
Target Start/End: Complemental strand, 42069115 - 42069042
Alignment:
Q  475 catgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttcta 548  Q
    ||||||||||| ||||||||||| ||| ||| ||| |||||||||||   ||||||||||||||||||||||||    
T  42069115 catgatcttaacggttagatttaattgatctctatgttattgtggtataccatctacacatgatttttcttcta 42069042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 475 - 548
Target Start/End: Complemental strand, 47031528 - 47031455
Alignment:
Q  475 catgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttcta 548  Q
    ||||||||||| ||||||||||| ||| ||| ||| |||||||||||   ||||||||||||||||||||||||    
T  47031528 catgatcttaatggttagatttaattgatctctatgttattgtggtataccatctacacatgatttttcttcta 47031455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 468 - 521
Target Start/End: Complemental strand, 15531287 - 15531234
Alignment:
Q  468 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggta 521  Q
    |||||||||||||||||| |||||||||||||| |||| ||| |||||||||||    
T  15531287 tttatttcatgatcttaatggttagatttacttagtctctatgttattgtggta 15531234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 4e-61; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 366 - 576
Target Start/End: Complemental strand, 31658998 - 31658787
Alignment:
Q  366 cagtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtaggacaaattttaatatggaccacttgctccatatgtcccaccatggaca 465  Q
    ||||||||||||||| ||||||| ||||||||  ||||||| ||| |||||||| ||||| ||||||||| ||||||||||||| |||||||||| ||||    
T  31658998 cagtcgtttaattcaaccaatcagatttcaagagatgacacatcacatgtaggataaattctaatatggatcacttgctccataagtcccaccatagaca 31658899  T
Q  466 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcc 565  Q
    ||||| ||| |||||||||| ||||||||||||||||||| ||| ||||||||||||  |||||||||||||||||||||||| || |||||| ||||||    
T  31658898 agtttcttttatgatcttaacggttagatttacttggtctctatgttattgtggtacaccatctacacatgatttttcttctaatatcaattctctctcc 31658799  T
Q  566 t-tttatttccc 576  Q
    | ||||||||||    
T  31658798 tctttatttccc 31658787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 367 - 545
Target Start/End: Complemental strand, 50650570 - 50650391
Alignment:
Q  367 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtagg-acaaattttaatatggaccacttgctccatatgtcccaccatggaca 465  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||| || ||||||| ||||||||| |||||| | ||||||| ||||||| ||||    
T  50650570 agtcgtttaattcagccaatcagatttcaagccatgacacgtcagatgttgggacaaattctaatatggatcacttgtttcatatgttccaccatagaca 50650471  T
Q  466 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 545  Q
    ||||||||||| |||||||| ||||||||||  ||||||| ||| ||||||||||||  | |||||||||||||||||||    
T  50650470 agtttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttctt 50650391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 382 - 566
Target Start/End: Original strand, 12938455 - 12938640
Alignment:
Q  382 ccaatcaaatttcaagtcatgacacgtcagatgt-aggacaaattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcatgat 480  Q
    ||||||| |||||||| ||||||||||||||||| |||||||||| ||||||||| |||||||| ||||||| ||||| ||||||||||||||||| |||    
T  12938455 ccaatcagatttcaagccatgacacgtcagatgttaggacaaattataatatggatcacttgcttcatatgttccaccgtggacaagtttatttcaagat 12938554  T
Q  481 cttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 566  Q
    ||||| |||||| |||||||||| | ||| ||||||||||||  | | ||||||||||||||||| || | |||| || |||||||    
T  12938555 cttaacggttaggtttacttggtgtctatgttattgtggtacaccctttacacatgatttttcttataattccaaatctctctcct 12938640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 468 - 569
Target Start/End: Original strand, 5232946 - 5233047
Alignment:
Q  468 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcctt 567  Q
    ||||||||||||||||||  |||||||||||||| ||| ||| ||||||||||||  ||||||||||||| |||||||||||||||||||| ||||||||    
T  5232946 tttatttcatgatcttaatagttagatttacttgatctttatgttattgtggtacaacatctacacatgaattttcttctagtaccaattctctctcctt 5233045  T
Q  568 tt 569  Q
    ||    
T  5233046 tt 5233047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 468 - 569
Target Start/End: Original strand, 20104322 - 20104423
Alignment:
Q  468 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcctt 567  Q
    |||||||||||||||||| ||||||||||||||| ||| ||| ||||||||||||  ||||||||||| | |||||||||||||||||||| ||||||||    
T  20104322 tttatttcatgatcttaatggttagatttacttgatctttatgttattgtggtacaacatctacacattaattttcttctagtaccaattctctctcctt 20104421  T
Q  568 tt 569  Q
    ||    
T  20104422 tt 20104423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 468 - 557
Target Start/End: Complemental strand, 39833307 - 39833218
Alignment:
Q  468 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaatt 557  Q
    ||||||||||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||    
T  39833307 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaatt 39833218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 382 - 496
Target Start/End: Original strand, 29833329 - 29833444
Alignment:
Q  382 ccaatcaaatttcaagtcatgacacgtcagatgta-ggacaaattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcatgat 480  Q
    ||||||| |||| |||| ||||||||||||| ||| ||||||||| ||||||||| |||||||||||||||| ||||||| ||||  |||| || |||||    
T  29833329 ccaatcagattttaagtgatgacacgtcagaagtaaggacaaattataatatggatcacttgctccatatgttccaccatagacagatttacttgatgat 29833428  T
Q  481 cttaaaggttagattt 496  Q
    ||||| ||||||||||    
T  29833429 cttaatggttagattt 29833444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 248 - 362
Target Start/End: Original strand, 4292984 - 4293095
Alignment:
Q  248 tttcttttatcagagacattttggtctccatttttagattctctcattaatactgtaatagggtgcagacccactcctgcc--gattttaatgcatttct 345  Q
    ||||||| |||| ||||||||||||||||||||||||| |||||||||     ||||||||||||||| ||||||||||||    ||||||||||||| |    
T  4292984 tttctttaatcaaagacattttggtctccatttttagactctctcatt-----tgtaatagggtgcaggcccactcctgccttttttttaatgcattttt 4293078  T
Q  346 tagcctttatcaaaaaa 362  Q
    |||||||||| ||||||    
T  4293079 tagcctttataaaaaaa 4293095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 367 - 542
Target Start/End: Complemental strand, 33216833 - 33216657
Alignment:
Q  367 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtag-gacaaattttaatatggaccacttgctccatatgtcccaccatggaca 465  Q
    |||||||| | | ||||||||| |||| |||| ||||||||||  | |||  |||||||| ||||||||| |||||||||||||||| ||||||| ||||    
T  33216833 agtcgtttgaatgagccaatcagattttaagtgatgacacgtcctaagtaatgacaaattataatatggatcacttgctccatatgttccaccatagaca 33216734  T
Q  466 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgattttt 542  Q
      |||| ||||||||||||| ||||||||||  |||| || |||  |||| ||||||  ||||||| ||| ||||||    
T  33216733 gatttacttcatgatcttaatggttagatttgtttggcctctatggtattatggtacagcatctacgcataattttt 33216657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 468 - 539
Target Start/End: Complemental strand, 36950234 - 36950163
Alignment:
Q  468 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatt 539  Q
    |||||||||||||||||| ||||||||||||||||||| ||| |||||||||||  |  |||||||||||||    
T  36950234 tttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtatattgtctacacatgatt 36950163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 468 - 521
Target Start/End: Complemental strand, 29703612 - 29703559
Alignment:
Q  468 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggta 521  Q
    |||||||||||||||||| |||||||||||||| |||| ||| |||||||||||    
T  29703612 tttatttcatgatcttaatggttagatttacttagtctctatgttattgtggta 29703559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 468 - 521
Target Start/End: Original strand, 53282294 - 53282347
Alignment:
Q  468 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggta 521  Q
    |||||||||| ||||||| |||||||||||||| |||| ||| |||||||||||    
T  53282294 tttatttcattatcttaatggttagatttacttagtctctatgttattgtggta 53282347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 114 - 158
Target Start/End: Original strand, 11536252 - 11536296
Alignment:
Q  114 agcacaagtagtaagcacatataaactcgttctaaaaagggtgta 158  Q
    |||||||||||| |||||||| |||||||||  ||||||||||||    
T  11536252 agcacaagtagtgagcacatacaaactcgtttaaaaaagggtgta 11536296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 9e-47; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 367 - 545
Target Start/End: Original strand, 30624903 - 30625082
Alignment:
Q  367 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtagg-acaaattttaatatggaccacttgctccatatgtcccaccatggaca 465  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||| || | ||||||||||||||| |||||||| ||||||| ||||||| ||||    
T  30624903 agtcgtttaattcaaccaatcagatttcaagtcatgacacgtcagatgttgggataaattttaatatggatcacttgcttcatatgttccaccatagaca 30625002  T
Q  466 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 545  Q
    |||||||||||  || |||| ||||||||||  ||||||| ||| ||||||||||||  | |||||||||||||||||||    
T  30625003 agtttatttcaaaattttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttctt 30625082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 382 - 545
Target Start/End: Complemental strand, 41413606 - 41413442
Alignment:
Q  382 ccaatcaaatttcaagtcatgacacgtcagatgt-aggacaaattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcatgat 480  Q
    ||||||| |||||||| ||||||||||||||||| |||||||||| ||||||||| |||||||| ||||||| ||||| ||||||||||||||||| |||    
T  41413606 ccaatcagatttcaagccatgacacgtcagatgttaggacaaattataatatggatcacttgcttcatatgttccaccgtggacaagtttatttcaagat 41413507  T
Q  481 cttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 545  Q
    ||||| |||||| |||||||||| | ||| ||||||||||||  | | |||||||||||||||||    
T  41413506 cttaacggttaggtttacttggtgtctatgttattgtggtacaccctttacacatgatttttctt 41413442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 382 - 566
Target Start/End: Original strand, 1828466 - 1828651
Alignment:
Q  382 ccaatcaaatttcaagtcatgacacgtcagatgt-aggacaaattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcatgat 480  Q
    ||||||| |||||||| ||||||||||||||||| | |||||||| ||||||||| |||||||| ||||||| ||||| ||||||||||||||||| |||    
T  1828466 ccaatcagatttcaagccatgacacgtcagatgttatgacaaattataatatggatcacttgcttcatatgttccaccgtggacaagtttatttcaagat 1828565  T
Q  481 cttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 566  Q
    ||||| |||||| |||||||||| | ||| ||||||||||||  | | ||||||||||||||||| || | |||| || |||||||    
T  1828566 cttaacggttaggtttacttggtgtctatgttattgtggtacaccctttacacatgatttttcttataattccaaatctctctcct 1828651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 382 - 566
Target Start/End: Original strand, 40313931 - 40314116
Alignment:
Q  382 ccaatcaaatttcaagtcatgacacgtcagatgt-aggacaaattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcatgat 480  Q
    ||||||| |||||||| ||||||||||||||||| ||||||||||  |||||||| |||||||| ||||||| ||||| ||||||||||||||||| |||    
T  40313931 ccaatcagatttcaagccatgacacgtcagatgttaggacaaattacaatatggatcacttgcttcatatgttccaccgtggacaagtttatttcaagat 40314030  T
Q  481 cttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 566  Q
    ||||| |||||| |||||||||| | ||| ||||||||||||  | | ||||||||||||||||| || | |||| || |||||||    
T  40314031 cttaacggttaggtttacttggtgtctatgttattgtggtacaccctttacacatgatttttcttataattccaaatctctctcct 40314116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 367 - 542
Target Start/End: Complemental strand, 31482247 - 31482071
Alignment:
Q  367 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgta-ggacaaattttaatatggaccacttgctccatatgtcccaccatggaca 465  Q
    |||||||| | | |||||||||||||| |||| ||||||| ||||| ||| ||||||||| ||||||||| |||||||||||||||| ||||||| ||||    
T  31482247 agtcgtttgaatgagccaatcaaattttaagtgatgacacttcagaagtaaggacaaattataatatggatcacttgctccatatgttccaccatagaca 31482148  T
Q  466 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgattttt 542  Q
      |||| ||||||||||||| ||||||||||  ||||||| |||  |||| ||||||  ||||||||||| ||||||    
T  31482147 gatttacttcatgatcttaatggttagatttgtttggtctctatggtattatggtacaccatctacacataattttt 31482071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 98 - 185
Target Start/End: Original strand, 33417416 - 33417503
Alignment:
Q  98 acaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtga 185  Q
    |||||||||||| || |||||||||||| |||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  33417416 acaagtttcaccaaaaagcacaagtagtgagcacatacaaattcgttctaaaaagggtgtaatcaaaagtaatcctaaatatttgtga 33417503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 468 - 566
Target Start/End: Complemental strand, 24788400 - 24788302
Alignment:
Q  468 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 566  Q
    ||||||| ||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  24788400 tttattttatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 24788302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 468 - 521
Target Start/End: Original strand, 39884696 - 39884749
Alignment:
Q  468 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggta 521  Q
    |||||||||||||||||| |||||||||||||| |||| ||| |||||||||||    
T  39884696 tttatttcatgatcttaatggttagatttacttagtctctatgttattgtggta 39884749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 120 - 189
Target Start/End: Original strand, 31610042 - 31610111
Alignment:
Q  120 agtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgactgt 189  Q
    |||||| |||||||| |||| |||||||||||||||||  ||||||| ||||| |||||| || ||||||    
T  31610042 agtagtgagcacatacaaacgcgttctaaaaagggtgtgatcaaaagcaatcccaaatatatgcgactgt 31610111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 134
Target Start/End: Complemental strand, 15867420 - 15867381
Alignment:
Q  95 tagacaagtttcaccgaagagcacaagtagtaagcacata 134  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  15867420 tagacaagtttcaccaaaaagcacaagtagtaagcacata 15867381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 9e-47; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 367 - 545
Target Start/End: Original strand, 27286203 - 27286382
Alignment:
Q  367 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtaggacaaatttt-aatatggaccacttgctccatatgtcccaccatggaca 465  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||| ||  ||||||| |||||||| |||||||| ||||||| ||||||| ||||    
T  27286203 agtcgtttaattcagccaatcagatttcaagccatgacacgtcagatgttgggaaaatttttaatatggatcacttgcttcatatgttccaccatagaca 27286302  T
Q  466 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 545  Q
    |||||||||||  ||||||| ||||||||||  ||||||| ||| ||||||||||||  | |||||||||||||||||||    
T  27286303 agtttatttcaaaatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttctt 27286382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 367 - 545
Target Start/End: Complemental strand, 52385992 - 52385813
Alignment:
Q  367 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtagg-acaaattttaatatggaccacttgctccatatgtcccaccatggaca 465  Q
    |||||||||||||||||||||| |||||||| |||||||| ||| |||| || ||||||| ||| ||||| ||| || | ||||||| ||||||| ||||    
T  52385992 agtcgtttaattcagccaatcagatttcaagccatgacacatcatatgttgggacaaattctaaaatggatcacgtgtttcatatgttccaccatagaca 52385893  T
Q  466 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 545  Q
    ||||||||||| |||||| | ||||||||||  ||| ||| ||| ||||||||||||  | |||||||||||||||||||    
T  52385892 agtttatttcaagatctttacggttagatttgtttgatctctatgttattgtggtacaccctctacacatgatttttctt 52385813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 383 - 565
Target Start/End: Original strand, 39241614 - 39241793
Alignment:
Q  383 caatcaaatttcaagtcatgacacgtcagatgtag-gacaaattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcatgatc 481  Q
    |||||| |||| |||| || ||||||||||||| | |||||||| ||||||| | |||||||| ||||||| ||||||| ||||||||||||||||||||    
T  39241614 caatcagattttaagtgataacacgtcagatgttgagacaaattctaatatg-atcacttgcttcatatgttccaccatagacaagtttatttcatgatc 39241712  T
Q  482 ttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcc 565  Q
    |||| |||||||||||| ||   | | | ||||||||||||  |||||||||||||||||||||||| |  |||||| ||||||    
T  39241713 ttaacggttagatttacctg---tctttgttattgtggtacaccatctacacatgatttttcttctaattacaattctctctcc 39241793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 468 - 566
Target Start/End: Original strand, 12981521 - 12981619
Alignment:
Q  468 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 566  Q
    ||||||||||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  12981521 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 12981619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 468 - 566
Target Start/End: Complemental strand, 45348344 - 45348246
Alignment:
Q  468 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 566  Q
    ||||||||||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  45348344 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 45348246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 42080758 - 42080685
Alignment:
Q  116 cacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgactgt 189  Q
    |||||||||| |||||||  |||||||||| |||||||||||| ||||||| ||||| |||||| | |||||||    
T  42080758 cacaagtagtgagcacatccaaactcgttccaaaaagggtgtaatcaaaagcaatcccaaatatgtttgactgt 42080685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 475 - 544
Target Start/End: Complemental strand, 45325704 - 45325635
Alignment:
Q  475 catgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttct 544  Q
    ||||||||||| ||||||||||| || |||| ||| |||||||||||   ||||||||||||||||||||    
T  45325704 catgatcttaacggttagatttaattagtctctatgttattgtggtataccatctacacatgatttttct 45325635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 43403941 - 43403894
Alignment:
Q  136 aaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgt 183  Q
    ||||||||||||||||||||||  ||||||| ||||| ||||||||||    
T  43403941 aaactcgttctaaaaagggtgtcatcaaaagcaatcccaaatatttgt 43403894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 5e-42; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 367 - 545
Target Start/End: Original strand, 14096295 - 14096474
Alignment:
Q  367 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtagg-acaaattttaatatggaccacttgctccatatgtcccaccatggaca 465  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||| || ||||||| ||||||||| |||||| | ||||||| ||||||| ||||    
T  14096295 agtcgtttaattcagccaatcagatttcaagacatgacacgtcagatgttgggacaaattctaatatggatcacttgtttcatatgttccaccatagaca 14096394  T
Q  466 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 545  Q
    ||||||||||| ||||||||  |||||||||  ||||||| |||  |||||||||||    |||||||||||||||||||    
T  14096395 agtttatttcaagatcttaaccgttagatttgtttggtctctatgatattgtggtacacgctctacacatgatttttctt 14096474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 455 - 576
Target Start/End: Complemental strand, 18977200 - 18977078
Alignment:
Q  455 caccatggacaagtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtacca 554  Q
    |||||||||||||||||||||||||||||||  ||||||||||||| |||| ||| ||||||||||||  ||||||||||| | ||||||||||||||||    
T  18977200 caccatggacaagtttatttcatgatcttaacagttagatttacttagtctctatgttattgtggtacaccatctacacataacttttcttctagtacca 18977101  T
Q  555 attcgctctcct-tttatttccc 576  Q
    |||  ||||||| ||||||||||    
T  18977100 attatctctcctctttatttccc 18977078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 468 - 569
Target Start/End: Original strand, 37078947 - 37079048
Alignment:
Q  468 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcctt 567  Q
    ||||||||||||||||||  |||||||||||||| ||| ||| ||||||||||||  ||||||||||||| |||||||||||||||||||| ||||||||    
T  37078947 tttatttcatgatcttaatagttagatttacttgatctttatgttattgtggtacaacatctacacatgaattttcttctagtaccaattctctctcctt 37079046  T
Q  568 tt 569  Q
    ||    
T  37079047 tt 37079048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 468 - 566
Target Start/End: Original strand, 15330735 - 15330833
Alignment:
Q  468 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 566  Q
    ||||||||||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  15330735 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 15330833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 468 - 566
Target Start/End: Complemental strand, 37261773 - 37261675
Alignment:
Q  468 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 566  Q
    ||||||||||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  37261773 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 37261675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 468 - 566
Target Start/End: Complemental strand, 14810191 - 14810093
Alignment:
Q  468 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 566  Q
    ||||||||||||| |||| ||||||||||| ||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  14810191 tttatttcatgattttaatggttagatttatttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 14810093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 468 - 566
Target Start/End: Original strand, 16429864 - 16429962
Alignment:
Q  468 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 566  Q
    ||||||||||||| |||| ||||||||||||||| ||| ||| ||||| ||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  16429864 tttatttcatgattttaatggttagatttacttgatctctatgttattatggtacaccatctacacatgatttttcttctagtaccaattttctctcct 16429962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 468 - 566
Target Start/End: Original strand, 17690604 - 17690702
Alignment:
Q  468 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 566  Q
    ||||||| ||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  17690604 tttattttatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 17690702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 21949960 - 21949895
Alignment:
Q  120 agtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtga 185  Q
    |||||| |||||||| ||||||||||||||||||||||| ||||||| ||||| ||||||||||||    
T  21949960 agtagtgagcacatacaaactcgttctaaaaagggtgtaatcaaaagcaatcccaaatatttgtga 21949895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 468 - 539
Target Start/End: Complemental strand, 33755146 - 33755075
Alignment:
Q  468 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatt 539  Q
    ||||||||||||| |||| ||||||||||||||||||||||| |||||||||||  |  |||||||||||||    
T  33755146 tttatttcatgatattaatggttagatttacttggtctatatgttattgtggtatattgtctacacatgatt 33755075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 468 - 521
Target Start/End: Original strand, 7089225 - 7089278
Alignment:
Q  468 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggta 521  Q
    |||||||||||||||||| ||||||||||||||| ||| ||| |||||||||||    
T  7089225 tttatttcatgatcttaatggttagatttacttgatctctatgttattgtggta 7089278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 41411569 - 41411516
Alignment:
Q  136 aaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgactgt 189  Q
    |||||||||| |||||||||||| ||||||| ||||| ||||||||||||||||    
T  41411569 aaactcgttccaaaaagggtgtaatcaaaagcaatcccaaatatttgtgactgt 41411516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 417
Target Start/End: Complemental strand, 18977264 - 18977214
Alignment:
Q  367 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtag 417  Q
    |||||||||||||||||||||| |||| |||| ||||||||||| ||||||    
T  18977264 agtcgtttaattcagccaatcagattttaagtgatgacacgtcacatgtag 18977214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 40275158 - 40275205
Alignment:
Q  136 aaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgt 183  Q
    ||||||||||||||||||||||  ||||||| ||||| ||||||||||    
T  40275158 aaactcgttctaaaaagggtgtcatcaaaagcaatcccaaatatttgt 40275205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 189
Target Start/End: Original strand, 9446973 - 9447042
Alignment:
Q  120 agtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgactgt 189  Q
    |||||| |||||| | |||| ||||| |||||||||||  ||||||| ||||| |||||| |||||||||    
T  9446973 agtagtgagcacacacaaacgcgttccaaaaagggtgtgatcaaaagcaatcccaaatatatgtgactgt 9447042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 187
Target Start/End: Original strand, 14555887 - 14555960
Alignment:
Q  114 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgact 187  Q
    |||||||| ||| | || ||| |||||||||| |||||||||||  ||||||| ||||| |||||| |||||||    
T  14555887 agcacaagcagtgatcatatacaaactcgttccaaaaagggtgtgatcaaaagcaatcccaaatatatgtgact 14555960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 95 - 171
Target Start/End: Complemental strand, 18559799 - 18559723
Alignment:
Q  95 tagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatc 171  Q
    ||||||||||||||| || || | |||||   |||| ||| ||||||||||||||||||| ||| ||||||| ||||    
T  18559799 tagacaagtttcaccaaaaagtataagtaacgagcagatacaaactcgttctaaaaagggcgtaatcaaaagcaatc 18559723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 114 - 186
Target Start/End: Complemental strand, 38346763 - 38346691
Alignment:
Q  114 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgac 186  Q
    |||||||||||| |||| ||| | ||||||||  |||||| ||| || ||||  |||||||||||||||||||    
T  38346763 agcacaagtagtgagcagatacatactcgttcacaaaaggatgtggtaaaaaacaatcctaaatatttgtgac 38346691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 367 - 545
Target Start/End: Original strand, 19436711 - 19436890
Alignment:
Q  367 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtagg-acaaattttaatatggaccacttgctccatatgtcccaccatggaca 465  Q
    |||||||||||||||||||||| |||||||| ||||| |||||| |||| || ||||||| ||||||||| |||||| | ||||||| ||||||| ||||    
T  19436711 agtcgtttaattcagccaatcagatttcaagccatgatacgtcatatgttgggacaaattctaatatggatcacttgtttcatatgttccaccatagaca 19436810  T
Q  466 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 545  Q
    ||||||||||| ||||||||  |||||||||  ||||||| ||| ||||||||||||  | | |||||||||||||||||    
T  19436811 agtttatttcaagatcttaacagttagatttgtttggtctctatgttattgtggtacaccctatacacatgatttttctt 19436890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 367 - 541
Target Start/End: Complemental strand, 29834123 - 29833948
Alignment:
Q  367 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtagg-acaaattttaatatggaccacttgctccatatgtcccaccatggaca 465  Q
    |||||||||||||||||||||| |||||||| ||||||| ||||||||| || ||||| | ||||||||| |||||||| ||||||| ||||||| ||||    
T  29834123 agtcgtttaattcagccaatcagatttcaagccatgacatgtcagatgttgggacaaactctaatatggatcacttgcttcatatgttccaccatagaca 29834024  T
Q  466 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttt 541  Q
    ||||||||||| ||||||||  |||||||||  ||||||| ||| |||||||||||   | ||| |||||||||||    
T  29834023 agtttatttcaagatcttaacagttagatttgtttggtctctatgttattgtggtaaaccctctgcacatgatttt 29833948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 468 - 569
Target Start/End: Original strand, 47327942 - 47328043
Alignment:
Q  468 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcctt 567  Q
    ||||||||||||||||||  |||||||||||||| ||| ||| ||||||||||||  ||||||||||||| |||||||||||||||||||| ||||||||    
T  47327942 tttatttcatgatcttaatagttagatttacttgatctttatgttattgtggtacaacatctacacatgaattttcttctagtaccaattctctctcctt 47328041  T
Q  568 tt 569  Q
    ||    
T  47328042 tt 47328043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 381 - 502
Target Start/End: Original strand, 29258440 - 29258562
Alignment:
Q  381 gccaatcaaatttcaagtcatgacacgtcagatgtaggacaaattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcatgat 480  Q
    |||||||| ||||||||| ||||||||||||||   ||||||||| ||| ||||| |||||||||||| ||| ||||| |||||||||||||||||| ||    
T  29258440 gccaatcagatttcaagtgatgacacgtcagataatggacaaattctaacatggatcacttgctccatgtgttccaccgtggacaagtttatttcataat 29258539  T
Q  481 c-ttaaaggttagatttacttgg 502  Q
    | |||| ||||||||||||||||    
T  29258540 ctttaacggttagatttacttgg 29258562  T

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Target: chr7; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 468 - 566
Target Start/End: Original strand, 45972423 - 45972521
Alignment:
Q  468 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 566  Q
    ||||||||||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  45972423 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 45972521  T

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Target: chr7; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 95 - 185
Target Start/End: Complemental strand, 8308298 - 8308208
Alignment:
Q  95 tagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtga 185  Q
    |||||||||||||| ||| || ||||||||| |||||||| |||||||||||||||||  |||| ||||||||||||| ||||||||||||    
T  8308298 tagacaagtttcactgaaaagtacaagtagtgagcacatacaaactcgttctaaaaagaatgtaatcaaaagtaatcccaaatatttgtga 8308208  T

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Target: chr7; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 468 - 552
Target Start/End: Original strand, 29243380 - 29243462
Alignment:
Q  468 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtac 552  Q
    |||||||||||||||||| ||||||||||||||| ||| |||  |||||||||||  ||||||||||||||||||||||||||||    
T  29243380 tttatttcatgatcttaatggttagatttacttgatctctat--tattgtggtacaccatctacacatgatttttcttctagtac 29243462  T

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Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 475 - 548
Target Start/End: Original strand, 6442633 - 6442706
Alignment:
Q  475 catgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttcta 548  Q
    |||||||||||  |||||||||| ||||||| ||| |||||||||||   ||||||||||||||||||||||||    
T  6442633 catgatcttaactgttagatttaattggtctctatgttattgtggtataccatctacacatgatttttcttcta 6442706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 95 - 180
Target Start/End: Original strand, 38836121 - 38836206
Alignment:
Q  95 tagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatt 180  Q
    ||||||||||||||| || |||||||||||| |||| ||| |||||||||| ||||| |||||  ||||||| ||||| |||||||    
T  38836121 tagacaagtttcaccaaaaagcacaagtagtgagcatatacaaactcgttccaaaaatggtgttatcaaaagcaatcccaaatatt 38836206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 479 - 548
Target Start/End: Original strand, 34094118 - 34094187
Alignment:
Q  479 atcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttcta 548  Q
    ||||||| ||||||||||| ||| ||| ||| |||||||||||   ||||||||||||||||||||||||    
T  34094118 atcttaacggttagatttaattgatctctatgttattgtggtataccatctacacatgatttttcttcta 34094187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 114 - 185
Target Start/End: Complemental strand, 49094614 - 49094543
Alignment:
Q  114 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtga 185  Q
    |||||||||||| |||||||| |||| ||||| ||||| |||||  ||||||| ||||| ||||||||||||    
T  49094614 agcacaagtagtgagcacatacaaacacgttccaaaaaaggtgttatcaaaagcaatcccaaatatttgtga 49094543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 186
Target Start/End: Complemental strand, 30559431 - 30559359
Alignment:
Q  114 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgac 186  Q
    ||||||||| || |||||||| ||||| |||| |||||||||||  ||||||| ||||| ||| |||||||||    
T  30559431 agcacaagtcgtgagcacatagaaacttgttccaaaaagggtgttatcaaaagcaatcccaaagatttgtgac 30559359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 25862676 - 25862613
Alignment:
Q  116 cacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatat 179  Q
    |||||||||| |||||||  ||||||| || |||||||||||| | ||||| ||||||||||||    
T  25862676 cacaagtagtgagcacatccaaactcgatccaaaaagggtgtaattaaaagcaatcctaaatat 25862613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 7e-29; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 382 - 542
Target Start/End: Complemental strand, 13802843 - 13802682
Alignment:
Q  382 ccaatcaaatttcaagtcatgacacgtcagatgta-ggacaaattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcatgat 480  Q
    ||||||| |||| |||| ||||||||||||| ||| ||||||||| ||||||||| |||||||||||||||| ||||||| ||||  |||| || |||||    
T  13802843 ccaatcagattttaagtgatgacacgtcagaagtaaggacaaattataatatggatcacttgctccatatgttccaccatagacagatttacttgatgat 13802744  T
Q  481 cttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgattttt 542  Q
    ||||| ||||||||||  ||||||| |||  |||| ||||||  ||||||||||| ||||||    
T  13802743 cttaatggttagatttgtttggtctctatcgtattatggtacaccatctacacataattttt 13802682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 468 - 566
Target Start/End: Original strand, 531684 - 531782
Alignment:
Q  468 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 566  Q
    |||||||||| || |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  531684 tttatttcataattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 531782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 95 - 185
Target Start/End: Original strand, 6596498 - 6596588
Alignment:
Q  95 tagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtga 185  Q
    |||||||||||||||||| |||| ||||||| |||||||  |||||| |||||||||||||||| ||||||| ||||||||||||||||||    
T  6596498 tagacaagtttcaccgaaaagcataagtagtgagcacatccaaactcattctaaaaagggtgtaatcaaaagcaatcctaaatatttgtga 6596588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 468 - 552
Target Start/End: Complemental strand, 30945527 - 30945445
Alignment:
Q  468 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtac 552  Q
    |||||||||||||||||| ||||||||||||||| ||| |||  |||||||||||  ||||||||||||||||||||||||||||    
T  30945527 tttatttcatgatcttaatggttagatttacttgatctctat--tattgtggtacaccatctacacatgatttttcttctagtac 30945445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 418 - 548
Target Start/End: Original strand, 23613574 - 23613705
Alignment:
Q  418 gacaaattttaatatggaccacttgctccatatgtcccaccatggacaa-gtttatttcatgatcttaaaggttagatttacttggtctatatattattg 516  Q
    |||||||| ||||||||||||||||||| |||||| |||||||||| ||  ||| ||| | |||||||| ||||||||||  |||||||  ||  |||||    
T  23613574 gacaaattctaatatggaccacttgctcaatatgttccaccatggataactttttttttaagatcttaacggttagatttgtttggtctccatgatattg 23613673  T
Q  517 tggtacgtcatctacacatgatttttcttcta 548  Q
    ||||||  | |||||||||||||||| |||||    
T  23613674 tggtacagcctctacacatgatttttgttcta 23613705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 468 - 539
Target Start/End: Complemental strand, 3879543 - 3879472
Alignment:
Q  468 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatt 539  Q
    |||||||||||||||||| ||||||||||||||||||| ||| |||||||||||  |  |||||||||||||    
T  3879543 tttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtatattgtctacacatgatt 3879472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 183
Target Start/End: Original strand, 19168178 - 19168247
Alignment:
Q  114 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgt 183  Q
    ||||||| || | |||||||| ||||||||||||||||||||||  ||||||| ||| | ||| ||||||    
T  19168178 agcacaattattgagcacatacaaactcgttctaaaaagggtgtcatcaaaagcaattccaaaaatttgt 19168247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 180
Target Start/End: Original strand, 40715928 - 40716013
Alignment:
Q  95 tagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatt 180  Q
    ||||||| ||||||| || | |||||||||| |||||||| |||||||||  ||||| | ||   ||||||| |||||||||||||    
T  40715928 tagacaaatttcaccaaaaaacacaagtagtgagcacatacaaactcgtttcaaaaaagatgctatcaaaagcaatcctaaatatt 40716013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 421 - 542
Target Start/End: Original strand, 23614215 - 23614338
Alignment:
Q  421 aaattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcat--gatcttaaaggttagatttacttggtctatatattattgtg 518  Q
    ||||| |||||| ||||||||| || ||||||  ||| |||||||| ||| |||  |  |||||||| ||||||||||  |||||||  ||| |||||||    
T  23614215 aaattctaatatagaccacttgatcaatatgtttcactatggacaacttttttttttaagatcttaacggttagatttgtttggtctccataatattgtg 23614314  T
Q  519 gtacgtcatctacacatgattttt 542  Q
    | ||  | ||||||||||||||||    
T  23614315 gcacaccctctacacatgattttt 23614338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 468 - 566
Target Start/End: Complemental strand, 30783 - 30685
Alignment:
Q  468 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 566  Q
    ||||||| ||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  30783 tttattttatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 30685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 183
Target Start/End: Complemental strand, 16599 - 16533
Alignment:
Q  117 acaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgt 183  Q
    ||||| ||| ||||||||||||||||||| || ||||||||  ||||||| ||||| ||||||||||    
T  16599 acaaggagtgagcacatataaactcgttccaagaagggtgtgatcaaaagcaatccaaaatatttgt 16533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 183
Target Start/End: Original strand, 18923 - 18991
Alignment:
Q  114 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgt 183  Q
    ||||||| || | |||||||| ||||||||||| ||||||||||  ||||||| ||||| ||||||||||    
T  18923 agcacaattattgagcacatacaaactcgttct-aaaagggtgtcatcaaaagcaatcccaaatatttgt 18991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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