View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15580_low_2 (Length: 433)
Name: NF15580_low_2
Description: NF15580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15580_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 6 - 416
Target Start/End: Original strand, 41728855 - 41729264
Alignment:
| Q |
6 |
agcagcacagactacactttgatcacattgcacatttattactgttagcaaagcaggagaaccaagattctctcttacataacaaacaaggaccctcaca |
105 |
Q |
| |
|
|||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41728855 |
agcaacacaaactacactatgatcacattgcacatttattactgttagcaaagcaggagaaccaagattctctcttacataacaaacaaggaccctcaca |
41728954 |
T |
|
| Q |
106 |
tttaaataactcaattctgaatttccaaacataaaaaactgcnnnnnnnnntt-caagcctatactctagataacataatcataaaactcagaaatatgt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41728955 |
tttaaataactcaattctgaatttccaaacataaaa--ctgcaaacaattttttcaagcctatactctagataacataatcataaaactcagaaatatgt |
41729052 |
T |
|
| Q |
205 |
gcaacatggtccatagtgtggctaggaatcttatcaagtttaataggattattcttccctccaatcaattttgccggattcccaaccaccgtagtccttg |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41729053 |
gcaacatggtccatagtgtggctaggaatcttatcaagtttaataggattattcttccctccaatcaattttgccggattcccaaccaccgtagtccttg |
41729152 |
T |
|
| Q |
305 |
gaggaacttccttgatcacaactgaaccagcgccaattttagcaccatcaccaatcttaatattccccaaaatacaagttccagcgcctataagcacccc |
404 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41729153 |
gaggaacttccttgatcacaactgaaccggcaccaattttagcaccatcaccaatcttaatattccccaaaatacaagttccagcgcctataagcacccc |
41729252 |
T |
|
| Q |
405 |
gtcaccaatctt |
416 |
Q |
| |
|
|||||||||||| |
|
|
| T |
41729253 |
gtcaccaatctt |
41729264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 168 - 389
Target Start/End: Original strand, 23158111 - 23158332
Alignment:
| Q |
168 |
actctagataacataatcataaaactcagaaatatgtgcaacatggtccatagtgtggctaggaatcttatcaagtttaataggattattcttccctcca |
267 |
Q |
| |
|
|||||| |||||||||||| | |||||||||||| || | |||||||||||| ||||||||||||||| | | |||||||||| || || ||| |
|
|
| T |
23158111 |
actctaaataacataatcagaccactcagaaatatatgaagtatggtccatagtagagctaggaatcttatccaacatgataggattatcttttccacca |
23158210 |
T |
|
| Q |
268 |
atcaattttgccggattcccaaccaccgtagtccttggaggaacttccttgatcacaactgaaccagcgccaattttagcaccatcaccaatcttaatat |
367 |
Q |
| |
|
||||| || || ||||| ||||| | ||||| ||||| ||||| ||||| | |||||| |||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
23158211 |
atcaacttagctggatttccaacagcagtagttcttggtggaacatccttcaacacaacagaaccagcaccaatcttagcaccatcaccaatcttaatat |
23158310 |
T |
|
| Q |
368 |
tccccaaaatacaagttccagc |
389 |
Q |
| |
|
|||| |||||||| |||||||| |
|
|
| T |
23158311 |
tccctaaaatacatgttccagc |
23158332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University