View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15581_high_1 (Length: 592)
Name: NF15581_high_1
Description: NF15581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15581_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 87 - 449
Target Start/End: Complemental strand, 45082931 - 45082570
Alignment:
| Q |
87 |
atgactaaaaatcatacataattgcttaaatttacatgatgaggttgttttgctggtgtgtgtgagtaggcatgcaccagccttctattattacaatctg |
186 |
Q |
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| T |
45082931 |
atgactaaaaatcatacataattgcttaaatttacatgatgaggttgttttgctg-tgtgtgtgagtaggcatgcaccagccttctattattacaatctg |
45082833 |
T |
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| Q |
187 |
gtattgatttatacagccagtgtcaatggttgagtactgtttttgctcatataggcaacaaattatagatagctagcacaggtgtgagccttgtgtggcc |
286 |
Q |
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| T |
45082832 |
gtattgatttatacagccagtgtcaatggttgagcactgtttttgctcatataggcaacaaattatagatagctagcacaggtgtgagccttgtgtggcc |
45082733 |
T |
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| Q |
287 |
aagaatgttgaaaatgttattttcaaatgattattgaaaacttttcatattcagcataaataaagccatttgtagtggtgacatggtcaactaatgtgtc |
386 |
Q |
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| T |
45082732 |
aagaatgttgacaatgttattttcaaatgattattgaaaacttctcatattcagcataaataaagccatttgtagtggtgacatggtcaactaatgtgtc |
45082633 |
T |
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| Q |
387 |
aattcttaaatataactttttgtggttcaattccacacctattagatgatgtaaaccgactac |
449 |
Q |
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| T |
45082632 |
aattcttgaatataactttttgtggttcaattccacacctattagatgatgttaaccgactac |
45082570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 516 - 573
Target Start/End: Complemental strand, 45082502 - 45082445
Alignment:
| Q |
516 |
actcaaaacgacagagattttggaataattagacagcgatgtaagctctataagcaaa |
573 |
Q |
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| T |
45082502 |
actcaaaacgacagagattttggaataattagacagcgatgtaagctctataagcaaa |
45082445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 45083021 - 45082959
Alignment:
| Q |
1 |
gatgagtgataagaagaccgaaagttctatagccacctccgaactccgatgtaagaccaacacggttatt |
70 |
Q |
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| T |
45083021 |
gatgagtgataagaagatcgaaagttctatagccacct-------ccgatgtaagaccaacacggttatt |
45082959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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