View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15581_low_1 (Length: 594)
Name: NF15581_low_1
Description: NF15581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15581_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 1e-98; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 191 - 399
Target Start/End: Original strand, 42165776 - 42165981
Alignment:
| Q |
191 |
gtaagagagtgagtgtgtgatgagaccactgaaaacttggtgctttatatatagttttggagttgtaatttgtaaacgtataatcttcttcattatagaa |
290 |
Q |
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| T |
42165776 |
gtaagagagtgagtgtgtgatgagaccactgaaaacttggtgctttatatatagtttaggagttgtaatttttaaacgtataatctt---cattatagaa |
42165872 |
T |
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| Q |
291 |
ataaaattatgtcatattctgaaaatatttcgacacgttttataacctatattttatttagggaataacctatattatttttgacaaaaatctatattat |
390 |
Q |
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| T |
42165873 |
ataaaattatgtcatattctgaaaatatttcgacacgttttataacctatattttatttagggaataacctatattatttttgacaaaaacctatattat |
42165972 |
T |
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| Q |
391 |
atgattctt |
399 |
Q |
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| T |
42165973 |
atgattctt |
42165981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 26 - 164
Target Start/End: Original strand, 42165615 - 42165753
Alignment:
| Q |
26 |
ggagagcagatatgccaatattaagacaatgagtaagaagttgtttggcttcttcctgacgttgtggtgggagattaggatccacaccggcgccaccatg |
125 |
Q |
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| T |
42165615 |
ggagagcaaatatgccaatattaagacaatgagtaagaagttgtttggcttcttcctgacgttgtggtgggagattaggatccacaccggcgccaccatg |
42165714 |
T |
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| Q |
126 |
cacagcaatagcccaaccaaccattttctctaccctagg |
164 |
Q |
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| T |
42165715 |
cacagcaatagcccaaccaaccattttctctgccctagg |
42165753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 500 - 559
Target Start/End: Original strand, 42166083 - 42166142
Alignment:
| Q |
500 |
caagacccatatatctatttgaaagaagattgtcaacaaaaacataagaaatcataatag |
559 |
Q |
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| T |
42166083 |
caagacccatatatctatttgaaagaagattgtcaacaaaaacataagaaatcataatag |
42166142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 28 - 149
Target Start/End: Original strand, 5481145 - 5481266
Alignment:
| Q |
28 |
agagcagatatgccaatattaagacaatgagtaagaagttgtttggcttcttcctgacgttgtggtgggagattaggatccacaccggcgccaccatgca |
127 |
Q |
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| T |
5481145 |
agagcagagatgccaagattgagaacacgagtaagaagttgtttggcttcttcttgacgttgaagagggagattagggtcaacaccagcaccaccatgca |
5481244 |
T |
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| Q |
128 |
cagcaatagcccaaccaaccat |
149 |
Q |
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| T |
5481245 |
cagcaattgcccaaccacccat |
5481266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 58 - 144
Target Start/End: Complemental strand, 47170269 - 47170183
Alignment:
| Q |
58 |
gtaagaagttgtttggcttcttcctgacgttgtggtgggagattaggatccacaccggcgccaccatgcacagcaatagcccaacca |
144 |
Q |
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| T |
47170269 |
gtaagaagctgtttggcttcttgctgacggtgtggtgggaggttaggatccacacctgcaccgccatgaacagcaatagcccaacca |
47170183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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