View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15581_low_3 (Length: 544)
Name: NF15581_low_3
Description: NF15581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15581_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 297
Target Start/End: Original strand, 8019046 - 8019325
Alignment:
| Q |
18 |
atgcaaacaagaaatatgcagcttcaatgaagagtcaaccttgtactcgatagacaactcagcctcaactgaagcattcaacataacattcataccttca |
117 |
Q |
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| T |
8019046 |
atgcaaacaagaaatatgcaacttcaatgaagagtcaaccttgtgctcgatagacagctcagcctcaactgaaacattcaacataacattcataccttca |
8019145 |
T |
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| Q |
118 |
aaacaccaatnnnnnnnnnnnncaataagaaattatcgtcttggtgcaacctcatctcaatttaaattcatcggttagattaccatttactaataccaaa |
217 |
Q |
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| T |
8019146 |
aaacaccgataaaaaacaaaaacaataagaaatgatcgtcttgctgcaacctcatctcaatttaaattcatcggttagattaccatttactaataccgaa |
8019245 |
T |
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| Q |
218 |
attgatgccaaagtaacgtacatcatagtccatcttctccataagactacgaaattcattttggacatgaccacatccaa |
297 |
Q |
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| T |
8019246 |
attgatgccgaagtaacatacatcatagtccatcttctccataagactacgaaattcattttggacatgaccacatccaa |
8019325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 291 - 455
Target Start/End: Original strand, 8019349 - 8019513
Alignment:
| Q |
291 |
catccaatatttgcctccctttaacgatcgacaatcaacttcaatctggttgctacaagtttcgacaacactttgtgcatataccagaccagtgatatca |
390 |
Q |
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| T |
8019349 |
catccaatatttgcctccctttaacgatcgacaatcaacttcaatctggttgctacaactttcgacaacactttgtgcatatgccagactagtgatatta |
8019448 |
T |
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| Q |
391 |
gcctaaaatcatacaattgttaaggactaacaactttcataatcatatgcaattagttaaaacct |
455 |
Q |
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| T |
8019449 |
gcctaaaatcatacaatcgttaaggactaacaactttcataatcatatgcaattagttaaaacct |
8019513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 503
Target Start/End: Complemental strand, 12217309 - 12217255
Alignment:
| Q |
448 |
taaaacctattacagttagttaaaactaactacctggatagtttgtggaacaagtt |
503 |
Q |
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| T |
12217309 |
taaaacctattacagttagttacaactaacta-ctagataacttgtggaacaagtt |
12217255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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