View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15581_low_4 (Length: 512)
Name: NF15581_low_4
Description: NF15581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15581_low_4 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 63 - 512
Target Start/End: Original strand, 14915789 - 14916242
Alignment:
| Q |
63 |
atgaagcccttataaaaattt-ggatatctagtatctcacatgattttgaaatcattgaagctgatatgtacatatatttatgtagcactattattacgg |
161 |
Q |
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| T |
14915789 |
atgaagcccttataaattttttggatatctagtatctcacatgattttgaaatcattgaagatgatatgtacatatatttatgtagcactattattacgg |
14915888 |
T |
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| Q |
162 |
ttttatatgtgaataacttgattatcattagttataagttttatgttgtgnnnnnnntcatatatatgtttgtggaattttatacattaagaacttttga |
261 |
Q |
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| T |
14915889 |
ttttatatgtgaataacttgattatcattagttataagttttatgttgtgaaaaaaatcatatatatgtttgtggaattttatacattaagaacttttga |
14915988 |
T |
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| Q |
262 |
tgaagtaaagattattcttgaaattaagtttactatgaatatgtactagctagtattgggacaccaatgtgatactgagaggatcatgtggtactttaaa |
361 |
Q |
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| T |
14915989 |
tgaagtaaagattattcttgaaattaagtttactatgaatatgtactagctagtattgggacaccaatgtgata--gtgaggatcatgtggtactttaaa |
14916086 |
T |
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| Q |
362 |
aaggccatgaattcaagatcattac-----nnnnnnnnnttcattgtactaaaaagttgcaatgatgttaattattataaaaaagtttaccatgatacaa |
456 |
Q |
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| T |
14916087 |
aaggccatgaattcaagatcattacaaaaaaaaaaaaaaatcattgtactaaaaagttgcaatgatgttaattattataaaaaagtttaccatgatacaa |
14916186 |
T |
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| Q |
457 |
gaaagctacaatgatgttgattagcttaccgttgtacttgaaaattacaatgatgc |
512 |
Q |
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| T |
14916187 |
gaaagctacaatgatgttgattagcttaccattgtacttgaaaattacaatgatgc |
14916242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 14915745 - 14915778
Alignment:
| Q |
14 |
gaacaattttatttggattagtttgatgagaata |
47 |
Q |
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| T |
14915745 |
gaacaattttatttggattagtttgatgagaata |
14915778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 410 - 511
Target Start/End: Complemental strand, 48516190 - 48516089
Alignment:
| Q |
410 |
aagttgcaatgatgttaattattataaaaaagtttaccatgatacaagaaagctacaatgatgttgattagcttaccgttgtacttgaaaattacaatga |
509 |
Q |
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| T |
48516190 |
aagttacaatgatgttgactattatcaaagagtttaccattgtattaagaagttacaatgatgttgattagtttaccaatgtatttgaaaattacaatga |
48516091 |
T |
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| Q |
510 |
tg |
511 |
Q |
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|| |
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| T |
48516090 |
tg |
48516089 |
T |
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