View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15581_low_5 (Length: 472)
Name: NF15581_low_5
Description: NF15581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15581_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 11 - 293
Target Start/End: Complemental strand, 51809580 - 51809307
Alignment:
| Q |
11 |
tattaaaaacatttaacccattttttgttctaagaaaaatatcctaatcctagaaaaatgagatagtggtagtactgactggtaactaactaagtagcag |
110 |
Q |
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| T |
51809580 |
tattaaaaacatttaacccattttttgttctaagaaaaatatcctaatcctagaaaa-----atagtggtagt----actggtaactaactaagtagcag |
51809490 |
T |
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| Q |
111 |
gtgagaagtggaaagcaaacaaaaaagagaaatggctgtgaagcacatagtgatcgcaaagttcaaggatgaaatctctcaagagaagattgatgaactc |
210 |
Q |
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| T |
51809489 |
gtgagaagtggaaagcaaacaaaaaagagaaatggctgtgaagcacatagtgatcgcaaagttcaaggatgaaatctctcaagagaagattgatgaactc |
51809390 |
T |
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| Q |
211 |
atcaagggttatgcaaatctcgtcaatctcatcccacccatgaagtcattccactggtatggaattatctattatttcttttc |
293 |
Q |
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| T |
51809389 |
atcaagggttatgcaaatctcgtcaatctcatcccacccatgaagtcattccactggtatggaattatctattatttcttttc |
51809307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 331 - 452
Target Start/End: Complemental strand, 51809310 - 51809190
Alignment:
| Q |
331 |
tttctttgcaaattacaaactgaggctgcaaaaaattgacccatttcactaaagattgaatttttagtaaattcattcaataattgggatttttccaagt |
430 |
Q |
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| T |
51809310 |
tttcttttcaaattacaaactgaggctgcaaaaaattgacccatttcacaaaagattgaatttttagtaaattcattcaataattggg-gttttccaagt |
51809212 |
T |
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| Q |
431 |
aagattaggaggagaatcagtg |
452 |
Q |
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| T |
51809211 |
aagattaggaggagaatcagtg |
51809190 |
T |
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