View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15581_low_7 (Length: 359)

Name: NF15581_low_7
Description: NF15581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15581_low_7
NF15581_low_7
[»] chr1 (31 HSPs)
chr1 (1-356)||(44927939-44928294)
chr1 (245-298)||(44936415-44936468)
chr1 (1-73)||(45999354-45999426)
chr1 (98-151)||(23373266-23373319)
chr1 (80-173)||(29723535-29723628)
chr1 (81-170)||(31517674-31517763)
chr1 (8-73)||(36151571-36151636)
chr1 (245-298)||(45989794-45989847)
chr1 (1-73)||(29793714-29793786)
chr1 (81-175)||(15581301-15581395)
chr1 (31-84)||(44936645-44936698)
chr1 (5-69)||(7028228-7028292)
chr1 (127-170)||(14737660-14737703)
chr1 (2-73)||(15360827-15360898)
chr1 (1-51)||(289172-289222)
chr1 (6-48)||(3887723-3887765)
chr1 (1-71)||(23544708-23544778)
chr1 (80-170)||(32515375-32515465)
chr1 (31-72)||(4200191-4200232)
chr1 (85-162)||(15579533-15579610)
chr1 (81-170)||(37593618-37593707)
chr1 (8-73)||(48830142-48830207)
chr1 (7-60)||(50319230-50319283)
chr1 (104-168)||(4118807-4118871)
chr1 (98-170)||(4549475-4549547)
chr1 (1-73)||(5421986-5422057)
chr1 (98-170)||(24279813-24279885)
chr1 (9-73)||(37842421-37842485)
chr1 (98-150)||(40485727-40485779)
chr1 (98-150)||(43338180-43338232)
chr1 (7-71)||(49888705-49888769)
[»] chr3 (23 HSPs)
chr3 (80-170)||(37273180-37273270)
chr3 (117-170)||(36189712-36189765)
chr3 (81-170)||(45541618-45541707)
chr3 (101-172)||(2620853-2620924)
chr3 (7-73)||(40122819-40122884)
chr3 (1-71)||(41028919-41028989)
chr3 (81-150)||(43115103-43115172)
chr3 (1-73)||(12923391-12923463)
chr3 (1-73)||(20192672-20192744)
chr3 (78-170)||(24603686-24603778)
chr3 (118-170)||(25459564-25459616)
chr3 (1-69)||(27792804-27792872)
chr3 (1-73)||(36139810-36139882)
chr3 (1-73)||(38462213-38462285)
chr3 (83-150)||(2923527-2923594)
chr3 (99-170)||(11253566-11253637)
chr3 (1-51)||(33307668-33307718)
chr3 (13-71)||(49586984-49587042)
chr3 (2-71)||(1395604-1395673)
chr3 (8-73)||(32703077-32703142)
chr3 (1-50)||(42039091-42039140)
chr3 (6-74)||(8007760-8007828)
chr3 (1-73)||(36101500-36101572)
[»] chr6 (19 HSPs)
chr6 (5-73)||(29274295-29274363)
chr6 (81-166)||(32976025-32976110)
chr6 (1-69)||(32386169-32386237)
chr6 (95-170)||(2455871-2455946)
chr6 (80-170)||(2460085-2460175)
chr6 (17-74)||(3785859-3785916)
chr6 (1-69)||(20671935-20672003)
chr6 (1-46)||(32917158-32917203)
chr6 (1-73)||(9093622-9093694)
chr6 (30-73)||(3785766-3785809)
chr6 (2-73)||(21959661-21959732)
chr6 (81-144)||(34939560-34939623)
chr6 (1-51)||(4248890-4248940)
chr6 (3-73)||(10452426-10452496)
chr6 (1-50)||(1669877-1669925)
chr6 (8-73)||(24836265-24836330)
chr6 (129-170)||(33080512-33080553)
chr6 (98-150)||(24973981-24974033)
chr6 (98-166)||(32917261-32917329)
[»] chr5 (16 HSPs)
chr5 (98-170)||(32172717-32172789)
chr5 (1-73)||(9202814-9202886)
chr5 (1-73)||(36539678-36539750)
chr5 (104-170)||(14599306-14599372)
chr5 (8-66)||(38831529-38831587)
chr5 (1-83)||(42569036-42569118)
chr5 (31-71)||(29116998-29117038)
chr5 (1-73)||(35135728-35135800)
chr5 (82-133)||(38766516-38766567)
chr5 (31-73)||(14295468-14295510)
chr5 (2-51)||(7096215-7096264)
chr5 (1-66)||(20982208-20982273)
chr5 (81-166)||(34117486-34117570)
chr5 (81-121)||(10272414-10272454)
chr5 (2-66)||(12595524-12595588)
chr5 (1-73)||(18704102-18704173)
[»] chr4 (17 HSPs)
chr4 (1-73)||(54325103-54325175)
chr4 (80-170)||(27123286-27123376)
chr4 (80-170)||(46019563-46019653)
chr4 (117-170)||(25487491-25487544)
chr4 (99-150)||(21157833-21157884)
chr4 (98-144)||(12816999-12817045)
chr4 (117-170)||(19429404-19429457)
chr4 (101-150)||(25717660-25717709)
chr4 (4-73)||(30338658-30338727)
chr4 (3-68)||(32724053-32724118)
chr4 (8-73)||(44119228-44119293)
chr4 (129-170)||(46797109-46797150)
chr4 (1-60)||(4191671-4191731)
chr4 (126-170)||(4663679-4663723)
chr4 (1-49)||(4798649-4798697)
chr4 (1-73)||(18630612-18630684)
chr4 (1-73)||(21593078-21593149)
[»] chr7 (14 HSPs)
chr7 (81-191)||(48157032-48157143)
chr7 (3-73)||(21453228-21453298)
chr7 (5-67)||(45593791-45593853)
chr7 (1-73)||(3610806-3610878)
chr7 (1-72)||(7244634-7244703)
chr7 (1-73)||(27548195-27548267)
chr7 (1-73)||(31002693-31002765)
chr7 (1-69)||(33894555-33894622)
chr7 (83-150)||(36537957-36538024)
chr7 (117-170)||(2825170-2825223)
chr7 (4-73)||(45813246-45813315)
chr7 (98-170)||(10079273-10079345)
chr7 (81-169)||(24967108-24967196)
chr7 (14-66)||(28440464-28440516)
[»] chr2 (24 HSPs)
chr2 (82-168)||(9878618-9878704)
chr2 (81-150)||(44606064-44606133)
chr2 (1-73)||(25609728-25609800)
chr2 (80-170)||(9996784-9996874)
chr2 (4-66)||(13630354-13630416)
chr2 (81-170)||(32821856-32821945)
chr2 (1-73)||(2416245-2416317)
chr2 (1-73)||(10143104-10143176)
chr2 (1-73)||(18962104-18962176)
chr2 (1-69)||(34339055-34339123)
chr2 (95-170)||(4661321-4661396)
chr2 (117-168)||(34927046-34927097)
chr2 (1-71)||(14209209-14209279)
chr2 (15-73)||(44438905-44438963)
chr2 (1-58)||(5045238-5045295)
chr2 (1-70)||(17952770-17952839)
chr2 (1-70)||(28803575-28803644)
chr2 (8-73)||(29430695-29430759)
chr2 (1-70)||(35459842-35459911)
chr2 (1-46)||(41039739-41039784)
chr2 (1-73)||(4550709-4550781)
chr2 (5-73)||(13866825-13866893)
chr2 (98-170)||(15780141-15780213)
chr2 (81-121)||(30538156-30538196)
[»] chr8 (14 HSPs)
chr8 (1-60)||(35298557-35298616)
chr8 (11-72)||(3537098-3537159)
chr8 (81-150)||(4560549-4560618)
chr8 (81-165)||(4511075-4511159)
chr8 (1-73)||(34770824-34770896)
chr8 (98-177)||(30191068-30191147)
chr8 (116-170)||(31884874-31884928)
chr8 (117-174)||(24326114-24326171)
chr8 (1-66)||(26215428-26215493)
chr8 (13-78)||(31862437-31862502)
chr8 (1-73)||(787172-787244)
chr8 (1-73)||(10114422-10114493)
chr8 (13-73)||(11000627-11000687)
chr8 (1-73)||(25872472-25872544)
[»] scaffold0590 (1 HSPs)
scaffold0590 (1-73)||(1140-1212)
[»] scaffold0275 (1 HSPs)
scaffold0275 (1-73)||(2763-2835)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-73)||(27508-27580)


Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 44928294 - 44927939
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataatatgtcttgaaaacaacttacgggcat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  44928294 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcatataagctataatatgtcttgaaaacaacttacgggcat 44928195  T
Q  101 gtcataagttgtgtctataagttcttccaaacaatcttacaagtgcttatactagtaaataagctcaaattagcttaatataaacaagcccctaacgtta 200  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44928194 gtcataagttgtttctataagttcttccaaacaatcttacaagtgcttatactagtaaataagctcaaattagcttaatataaacaagcccctaacgtta 44928095  T
Q  201 cagcaaatgacatgaatagtgtttaaagtcaaatataccttttcctttgcctgtctcatgtcttccatgtttagaggcctgagggcaatcacttgatcac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44928094 cagcaaatgacatgaatagtgtttaaagtcaaatataccttttcctttgcctgtctcatgtcttccatgtttagaggcctgagggcaatcacttgatcac 44927995  T
Q  301 ttttttcttcatctccagtattggaaacatcttctgatttttcaacttctgcctcc 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44927994 ttttttcttcatctccagtattggaaacatcttctgatttttcaacttctgcctcc 44927939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 44936468 - 44936415
Alignment:
Q  245 ctttgcctgtctcatgtcttccatgtttagaggcctgagggcaatcacttgatc 298  Q
    |||||||| ||||||||| |||||||||| ||||||||||||||||||||||||    
T  44936468 ctttgcctctctcatgtcctccatgtttaaaggcctgagggcaatcacttgatc 44936415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 45999426 - 45999354
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    |||||||| ||||||||||||||||  |  ||||||||||||||||||||| ||| |||| ||||||||||||    
T  45999426 taagtgctcatgtataagctatttctataacaaaagataagataaagtcaaactgctttcatataagctataa 45999354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 23373319 - 23373266
Alignment:
Q  98 catgtcataagttgtgtctataagttcttccaaacaatcttacaagtgcttata 151  Q
    ||||||||||||||| |||||||| ||| ||||||||||| |||||||||||||    
T  23373319 catgtcataagttgtttctataagctctcccaaacaatctcacaagtgcttata 23373266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 173
Target Start/End: Original strand, 29723535 - 29723628
Alignment:
Q  80 ttgaaaacaacttacgggcatgtcataagttgtgtctataagttcttccaaacaatcttacaagtgcttatactagtaaataagctcaaattag 173  Q
    |||||||||  ||| || ||||||||||| ||| || || ||||||| |||||  | | |||||||||||| ||||||||||||||||||||||    
T  29723535 ttgaaaacagtttatggacatgtcataagctgtttccattagttctttcaaactgtatcacaagtgcttatgctagtaaataagctcaaattag 29723628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 170
Target Start/End: Complemental strand, 31517763 - 31517674
Alignment:
Q  81 tgaaaacaacttacgggcatgtcataagttgtgtctataagttcttccaaacaatcttacaagtgcttatactagtaaataagctcaaat 170  Q
    |||||||| |||| |  |||||||| |||||| |  ||||||||| ||||||| ||| |||||||||||| | |||||||||||||||||    
T  31517763 tgaaaacagcttatgaacatgtcatgagttgttttgataagttctcccaaacagtctcacaagtgcttatgccagtaaataagctcaaat 31517674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 36151636 - 36151571
Alignment:
Q  8 ttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    ||||||||||||||||||| |  |||||||||| ||||||||||  |||||||||||||| |||||    
T  36151636 ttatgtataagctatttcaataacaaaagataaaataaagtcaaattgttttcgtataagttataa 36151571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 45989847 - 45989794
Alignment:
Q  245 ctttgcctgtctcatgtcttccatgtttagaggcctgagggcaatcacttgatc 298  Q
    ||||||||||||||||||||||||||| | ||||| ||||| ||||||||||||    
T  45989847 ctttgcctgtctcatgtcttccatgttcaaaggccggagggaaatcacttgatc 45989794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 29793714 - 29793786
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    |||||||||||||| ||||||||||     |||||||||| ||||||| ||| ||||||||||||||||||||    
T  29793714 taagtgcttatgtacaagctatttctacaacaaaagataacataaagttaagttgttttcgtataagctataa 29793786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 175
Target Start/End: Original strand, 15581301 - 15581395
Alignment:
Q  81 tgaaaacaacttacgggcatgtcataagttgtgtctataagttcttccaaacaatcttacaagtgcttatactagtaaataagctcaaattagct 175  Q
    |||||||| ||||  | ||||||||||||||| || || || ||||||||||||||| ||||||||||||   |||| ||||||| |||| ||||    
T  15581301 tgaaaacagcttatagacatgtcataagttgtttccattagctcttccaaacaatctcacaagtgcttatgtcagtagataagctaaaataagct 15581395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 44936698 - 44936645
Alignment:
Q  31 caaaagataagataaagtcaagctgttttcgtataagctataatatgtcttgaa 84  Q
    ||||||||||||||||||||| || ||||| ||||||||||||| | |||||||    
T  44936698 caaaagataagataaagtcaaactattttcatataagctataatctatcttgaa 44936645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 7028228 - 7028292
Alignment:
Q  5 tgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagct 69  Q
    ||||||||||||| |||||||  | ||||||||||| ||||||| ||| |||||| |||||||||    
T  7028228 tgcttatgtataaactatttctatagcaaaagataaaataaagttaagttgtttttgtataagct 7028292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 170
Target Start/End: Complemental strand, 14737703 - 14737660
Alignment:
Q  127 ccaaacaatcttacaagtgcttatactagtaaataagctcaaat 170  Q
    ||||||| ||| |||||||||||| |||||||||||||||||||    
T  14737703 ccaaacagtctcacaagtgcttattctagtaaataagctcaaat 14737660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 15360827 - 15360898
Alignment:
Q  2 aagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    ||||| |||||||| || ||||||  |  |||||||||| |||||||||| |||||||| ||||||||||||    
T  15360827 aagtgtttatgtattagttatttctataacaaaagataaaataaagtcaaactgttttcatataagctataa 15360898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 289172 - 289222
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaa 51  Q
    |||||||||| |||||||||||||  || ||||||||||| ||||||||||    
T  289172 taagtgcttaagtataagctatttttgtagcaaaagataaaataaagtcaa 289222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 48
Target Start/End: Complemental strand, 3887765 - 3887723
Alignment:
Q  6 gcttatgtataagctatttcagttgcaaaagataagataaagt 48  Q
    ||||||||||||||||||||| | ||||||||||| |||||||    
T  3887765 gcttatgtataagctatttcaatagcaaaagataaaataaagt 3887723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 23544778 - 23544708
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctat 71  Q
    |||| ||||||||||||||||||||  | | ||||||||| || |||||||  ||||||| ||||||||||    
T  23544778 taagcgcttatgtataagctatttctatggaaaaagataaaattaagtcaaattgttttcatataagctat 23544708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 170
Target Start/End: Complemental strand, 32515465 - 32515375
Alignment:
Q  80 ttgaaaacaacttacgggcatgtcataagttgtgtctataagttcttccaaacaatcttacaagtgcttatactagtaaataagctcaaat 170  Q
    ||||||||||||||  | ||||||||| | ||| || ||||| ||| ||||||| ||| ||||||||||||  ||||| |||| |||||||    
T  32515465 ttgaaaacaacttattgacatgtcatacgctgtttccataagctctcccaaacagtctcacaagtgcttatgttagtagataaactcaaat 32515375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 4200191 - 4200232
Alignment:
Q  31 caaaagataagataaagtcaagctgttttcgtataagctata 72  Q
    |||||||||| ||||||||||| ||||||| |||||||||||    
T  4200191 caaaagataaaataaagtcaagttgttttcatataagctata 4200232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 162
Target Start/End: Original strand, 15579533 - 15579610
Alignment:
Q  85 aacaacttacgggcatgtcataagttgtgtctataagttcttccaaacaatcttacaagtgcttatactagtaaataa 162  Q
    ||||||||| || ||||||||||||||| || | ||| ||| ||||||| |||| ||||| ||||| |||||| ||||    
T  15579533 aacaacttatggacatgtcataagttgtttccacaagctctcccaaacagtcttgcaagttcttatgctagtagataa 15579610  T

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Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 170
Target Start/End: Complemental strand, 37593707 - 37593618
Alignment:
Q  81 tgaaaacaacttacgggcatgtcataagttgtgtctataagttcttccaaacaatcttacaagtgcttatactagtaaataagctcaaat 170  Q
    |||||||| |||| |  |||||||||||||||||  || |||| | ||||||| ||| ||||||| |||| | |||| ||||||||||||    
T  37593707 tgaaaacagcttatgaacatgtcataagttgtgttcattagttttcccaaacagtctaacaagtgtttatgccagtatataagctcaaat 37593618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 48830207 - 48830142
Alignment:
Q  8 ttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    ||||||||||| ||||||  || | |||||||| |||||||||| || ||||| ||||||||||||    
T  48830207 ttatgtataagttatttctattaccaaagataaaataaagtcaaactattttcatataagctataa 48830142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 50319230 - 50319283
Alignment:
Q  7 cttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttc 60  Q
    |||||||||||||||||||  |  |||||||||| ||||||||||| |||||||    
T  50319230 cttatgtataagctatttctataacaaaagataaaataaagtcaagttgttttc 50319283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 168
Target Start/End: Complemental strand, 4118871 - 4118807
Alignment:
Q  104 ataagttgtgtctataagttcttccaaacaatcttacaagtgcttatactagtaaataagctcaa 168  Q
    ||||||||| |||||||| |||| |||| | ||| | ||||| ||||||||||| ||||||||||    
T  4118871 ataagttgtttctataagctctttcaaagagtctcaaaagtgtttatactagtagataagctcaa 4118807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 4549547 - 4549475
Alignment:
Q  98 catgtcataagttgtgtctataagttcttccaaacaatcttacaagtgcttatactagtaaataagctcaaat 170  Q
    ||||||||||||||| |||||||| ||| ||||||| ||| | || ||||||| | |||| |||| |||||||    
T  4549547 catgtcataagttgtttctataagctctcccaaacagtctcagaaatgcttatgccagtagataatctcaaat 4549475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 5422057 - 5421986
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    ||||||||||| |||||||||||||  |  |||||||||| ||| ||||||  ||||||| ||||||||||||    
T  5422057 taagtgcttat-tataagctatttccatgacaaaagataaaatatagtcaaattgttttcttataagctataa 5421986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 24279813 - 24279885
Alignment:
Q  98 catgtcataagttgtgtctataagttcttccaaacaatcttacaagtgcttatactagtaaataagctcaaat 170  Q
    ||||||||||||||| || ||| ||||  |||| || ||| ||||||| |||| |||||||||||| ||||||    
T  24279813 catgtcataagttgtttccataggttcccccaatcagtctcacaagtgtttatgctagtaaataagttcaaat 24279885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 37842485 - 37842421
Alignment:
Q  9 tatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    |||||||||||||||||  | ||||||||| | ||||||| || |||| |||| |||||||||||    
T  37842485 tatgtataagctatttctatagcaaaagatgaaataaagttaaactgtgttcgaataagctataa 37842421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 40485779 - 40485727
Alignment:
Q  98 catgtcataagttgtgtctataagttcttccaaacaatcttacaagtgcttat 150  Q
    ||||||||||| ||| || ||||||||| ||||||| ||| ||||||||||||    
T  40485779 catgtcataagatgtttcaataagttctcccaaacagtctcacaagtgcttat 40485727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 43338180 - 43338232
Alignment:
Q  98 catgtcataagttgtgtctataagttcttccaaacaatcttacaagtgcttat 150  Q
    ||||||||||| ||| || ||||||||||| ||| |||||||||| |||||||    
T  43338180 catgtcataagctgtttccataagttcttctaaataatcttacaaatgcttat 43338232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 49888705 - 49888769
Alignment:
Q  7 cttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctat 71  Q
    |||||||||||||||||||  | | ||||||||| |||||||  |  ||||||||||||||||||    
T  49888705 cttatgtataagctatttctttggaaaaagataaaataaagtttaattgttttcgtataagctat 49888769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 170
Target Start/End: Original strand, 37273180 - 37273270
Alignment:
Q  80 ttgaaaacaacttacgggcatgtcataagttgtgtctataagttcttccaaacaatcttacaagtgcttatactagtaaataagctcaaat 170  Q
    |||||||||||||| || ||||||||||||||| || ||||| ||| ||||||| ||| || ||||||||| ||| |||||||| ||||||    
T  37273180 ttgaaaacaacttatggacatgtcataagttgtttccataagctctcccaaacagtctcaccagtgcttatgctaataaataagttcaaat 37273270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 36189712 - 36189765
Alignment:
Q  117 ataagttcttccaaacaatcttacaagtgcttatactagtaaataagctcaaat 170  Q
    |||||||| |||||||| ||| ||||||||||||||||||||||||||||||||    
T  36189712 ataagttcctccaaacagtctcacaagtgcttatactagtaaataagctcaaat 36189765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 170
Target Start/End: Original strand, 45541618 - 45541707
Alignment:
Q  81 tgaaaacaacttacgggcatgtcataagttgtgtctataagttcttccaaacaatcttacaagtgcttatactagtaaataagctcaaat 170  Q
    |||||||| |||| |  ||||||||||| ||| |  ||||||||||| ||||| ||||||||||| |||||| | |||||||||||||||    
T  45541618 tgaaaacagcttatgaacatgtcataagctgttttcataagttcttctaaacagtcttacaagtgtttataccattaaataagctcaaat 45541707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 2620924 - 2620853
Alignment:
Q  101 gtcataagttgtgtctataagttcttccaaacaatcttacaagtgcttatactagtaaataagctcaaatta 172  Q
    ||||||||  || ||| ||| |||| ||||||||| ||| |||| |||||||||||||||||||||||||||    
T  2620924 gtcataagcagtttctgtaaattctcccaaacaatattaaaagttcttatactagtaaataagctcaaatta 2620853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 40122884 - 40122819
Alignment:
Q  7 cttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    |||||||||||||||||||| |  |||||||||| |||||||||| |||||||| || |||||||||    
T  40122884 cttatgtataagctatttcaataacaaaagataaaataaagtcaaactgttttcata-aagctataa 40122819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 41028989 - 41028919
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctat 71  Q
    |||||||||||||||||||||||||  |  ||||||| || |||||||||| ||||||||  |||||||||    
T  41028989 taagtgcttatgtataagctatttctataacaaaagaaaaaataaagtcaatctgttttcaaataagctat 41028919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 150
Target Start/End: Original strand, 43115103 - 43115172
Alignment:
Q  81 tgaaaacaacttacgggcatgtcataagttgtgtctataagttcttccaaacaatcttacaagtgcttat 150  Q
    ||||||||| ||| || ||||||||||||||| || ||||  ||||||||||||||| ||||||| ||||    
T  43115103 tgaaaacaagttatggacatgtcataagttgtttccataaactcttccaaacaatctcacaagtgattat 43115172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 12923463 - 12923391
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    ||||||||| ||||||||||||| | ||   ||||||||| |||||||||| ||| |||| ||||||||||||    
T  12923463 taagtgcttgtgtataagctattgctgtaataaaagataaaataaagtcaaactgctttcttataagctataa 12923391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 20192744 - 20192672
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    ||||||||||||||||||||||||   |  |||||||||| |||||||||| | |||||| ||||| ||||||    
T  20192744 taagtgcttatgtataagctatttatataacaaaagataaaataaagtcaaacagttttcatataatctataa 20192672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 170
Target Start/End: Complemental strand, 24603778 - 24603686
Alignment:
Q  78 tcttgaaaacaacttacgggcatgtcataagttgtgtctataagttcttccaaacaatcttacaagtgcttatactagtaaataagctcaaat 170  Q
    ||||||||||| |||| |||||||||||||  ||| || ||||||||| ||||||| ||| | | |||||||| |||||| | || |||||||    
T  24603778 tcttgaaaacagcttatgggcatgtcataaactgtttcaataagttctcccaaacagtctcagaggtgcttatgctagtagaaaacctcaaat 24603686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 25459616 - 25459564
Alignment:
Q  118 taagttcttccaaacaatcttacaagtgcttatactagtaaataagctcaaat 170  Q
    |||| ||||||||||||||| |||||||||||| |||||  ||||||||||||    
T  25459616 taagctcttccaaacaatctcacaagtgcttatgctagttgataagctcaaat 25459564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 27792804 - 27792872
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagct 69  Q
    ||||||||||||||||||||||||||    |||||||||| |||| ||||| || ||||| ||||||||    
T  27792804 taagtgcttatgtataagctatttcaaaaacaaaagataaaataaggtcaaactattttcatataagct 27792872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 36139810 - 36139882
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    |||||| ||||| |||||||||||| ||   | ||||||| |||||||||| ||| |||||||||||||||||    
T  36139810 taagtggttatgaataagctatttctgtaatataagataaaataaagtcaaactgatttcgtataagctataa 36139882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 38462213 - 38462285
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    |||||| |||| |||||||||||||  |  |||||||||| |||||||||| |||||||| |||| |||||||    
T  38462213 taagtgtttatttataagctatttctataccaaaagataaaataaagtcaaactgttttcatatatgctataa 38462285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 2923527 - 2923594
Alignment:
Q  83 aaaacaacttacgggcatgtcataagttgtgtctataagttcttccaaacaatcttacaagtgcttat 150  Q
    |||| |||||| || |||||  |||||||| |||||||||||||||||||| |||| ||||| |||||    
T  2923527 aaaataacttatggacatgtagtaagttgtttctataagttcttccaaacagtctttcaagtacttat 2923594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 170
Target Start/End: Original strand, 11253566 - 11253637
Alignment:
Q  99 atgtcataagttgtgtctataagttcttccaaacaatcttacaagtgcttatactagtaaataagctcaaat 170  Q
    |||||||||||||| | ||||| |||| ||||||| |||  ||||||||||| |||||| |||| |||||||    
T  11253566 atgtcataagttgtttttataaattctgccaaacagtctctcaagtgcttatgctagtagataatctcaaat 11253637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 33307718 - 33307668
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaa 51  Q
    ||||||||||||||||||||||||||||  ||||| || | ||||||||||    
T  33307718 taagtgcttatgtataagctatttcagtaacaaaatatgaaataaagtcaa 33307668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 49587042 - 49586984
Alignment:
Q  13 tataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctat 71  Q
    |||||||||||||  |  |||||||||| |||||||||| |||||||| ||||||||||    
T  49587042 tataagctatttctataacaaaagataaaataaagtcaaactgttttcatataagctat 49586984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 1395604 - 1395673
Alignment:
Q  2 aagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctat 71  Q
    |||||| |||||||||||||||||  |  |||||||||| ||||||||||  | ||||| ||||||||||    
T  1395604 aagtgcatatgtataagctatttctataacaaaagataaaataaagtcaaattattttcatataagctat 1395673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 32703077 - 32703142
Alignment:
Q  8 ttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    ||||||||||||||||||  ||  ||||||||| ||||| ||||  ||||||| ||||||||||||    
T  32703077 ttatgtataagctatttctattataaaagataaaataaactcaaattgttttcatataagctataa 32703142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 42039091 - 42039140
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtca 50  Q
    ||||||||||||||||||||||||| ||  ||||| |||| |||||||||    
T  42039091 taagtgcttatgtataagctatttctgtaacaaaaaataaaataaagtca 42039140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 8007828 - 8007760
Alignment:
Q  6 gcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataat 74  Q
    ||||||||||||||| ||||  |  ||||||||||  ||||||||| ||||| || |||||||||||||    
T  8007828 gcttatgtataagctgtttctataacaaaagataaagtaaagtcaaactgttatcatataagctataat 8007760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 36101500 - 36101572
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    |||||| ||||| |||||||||||| ||   | ||||||| |||||||||| ||| |||||||||| ||||||    
T  36101500 taagtggttatgaataagctatttctgtaatataagataaaataaagtcaaactgatttcgtataatctataa 36101572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 29274363 - 29274295
Alignment:
Q  5 tgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    |||||||||||||||||||||  | ||||||||||| ||||||||||  ||||||| ||||||||||||    
T  29274363 tgcttatgtataagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagctataa 29274295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 166
Target Start/End: Original strand, 32976025 - 32976110
Alignment:
Q  81 tgaaaacaacttacgggcatgtcataagttgtgtctataagttcttccaaacaatcttacaagtgcttatactagtaaataagctc 166  Q
    |||||||| |||| ||  |||||||||| ||| |||||||| ||||||||||| ||| |||||| ||||| | |||||||||||||    
T  32976025 tgaaaacagcttatggaaatgtcataagctgtttctataagctcttccaaacagtctcacaagtacttatgccagtaaataagctc 32976110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 32386237 - 32386169
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagct 69  Q
    |||||||||||||||||||||||||| ||  ||||||||| ||||||| || |||||||  ||||||||    
T  32386237 taagtgcttatgtataagctatttcacttagaaaagataaaataaagtaaaactgtttttatataagct 32386169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 170
Target Start/End: Original strand, 2455871 - 2455946
Alignment:
Q  95 gggcatgtcataagttgtgtctataagttcttccaaacaatcttacaagtgcttatactagtaaataagctcaaat 170  Q
    |||||||||||||||||| || ||||| ||||| |||||||||  ||||||||||| |  ||| ||||||||||||    
T  2455871 gggcatgtcataagttgtttccataagctcttctaaacaatctcgcaagtgcttatgccggtagataagctcaaat 2455946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 170
Target Start/End: Complemental strand, 2460175 - 2460085
Alignment:
Q  80 ttgaaaacaacttacgggcatgtcataagttgtgtctataagttcttccaaacaatcttacaagtgcttatactagtaaataagctcaaat 170  Q
    ||||||||||||||  | ||||||||||||||| || ||||| |||  |||||| ||| |||||| ||||| |||||  ||||||||||||    
T  2460175 ttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctcacaagtacttatgctagtttataagctcaaat 2460085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 3785916 - 3785859
Alignment:
Q  17 agctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataat 74  Q
    ||||||||| || ||||||||||| ||||||| || ||||||||||| ||||||||||    
T  3785916 agctatttcggtagcaaaagataaaataaagttaaactgttttcgtacaagctataat 3785859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 20672003 - 20671935
Alignment:
Q  1 taagtgcttatgtataagctatttc-agttgcaaaagataagataaagtcaagctgttttcgtataagct 69  Q
    |||||| |||||||||||||||||| || | |||||||||| ||||||||||  ||||||||||||||||    
T  20672003 taagtgattatgtataagctatttctagat-caaaagataaaataaagtcaaattgttttcgtataagct 20671935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 32917158 - 32917203
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaa 46  Q
    |||||||||||||||||||||||||| | ||||||||||| |||||    
T  32917158 taagtgcttatgtataagctatttcaatagcaaaagataaaataaa 32917203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 9093694 - 9093622
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    |||| ||||||| ||||||||||||  |  |||||||||| ||||||| ||  ||||||||||||||||||||    
T  9093694 taagcgcttatggataagctatttctatatcaaaagataaaataaagttaaattgttttcgtataagctataa 9093622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 3785809 - 3785766
Alignment:
Q  30 gcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    ||||||||||| ||||||| || |||||||||||||||||||||    
T  3785809 gcaaaagataaaataaagttaaactgttttcgtataagctataa 3785766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 21959661 - 21959732
Alignment:
Q  2 aagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    ||||||||| ||||||||||||||  |  |||||||||| ||||||||||  ||||| | ||||||||||||    
T  21959661 aagtgcttaagtataagctatttccataacaaaagataaaataaagtcaatttgtttgcatataagctataa 21959732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 34939560 - 34939623
Alignment:
Q  81 tgaaaacaacttacgggcatgtcataagttgtgtctataagttcttccaaacaatcttacaagt 144  Q
    |||||||||||||||| | ||||||||||||| || ||||| |||  |||||||| ||||||||    
T  34939560 tgaaaacaacttacggacgtgtcataagttgtttccataagctctctcaaacaattttacaagt 34939623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 4248890 - 4248940
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaa 51  Q
    ||||||||||| |||||||||||||| |  |||||||||| ||||||||||    
T  4248890 taagtgcttatatataagctatttcaataacaaaagataaaataaagtcaa 4248940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 10452496 - 10452426
Alignment:
Q  3 agtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    |||||||||||||||||||||||  |  ||||| |||| ||||| |||| || ||||| ||||||||||||    
T  10452496 agtgcttatgtataagctatttctataacaaaatataaaataaaatcaaactattttcatataagctataa 10452426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 1669925 - 1669877
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtca 50  Q
    |||||||||||||||||||||||||| ||  ||||||| |||||||||||    
T  1669925 taagtgcttatgtataagctatttcaattataaaagat-agataaagtca 1669877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 24836330 - 24836265
Alignment:
Q  8 ttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    ||||||||||| ||||||  |  |||||||||| ||||||||||  ||||||||||||| ||||||    
T  24836330 ttatgtataagttatttctataacaaaagataaaataaagtcaaattgttttcgtataaactataa 24836265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 170
Target Start/End: Complemental strand, 33080553 - 33080512
Alignment:
Q  129 aaacaatcttacaagtgcttatactagtaaataagctcaaat 170  Q
    ||||||||| |||||||||||| | |||||||||||||||||    
T  33080553 aaacaatctcacaagtgcttatgccagtaaataagctcaaat 33080512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 24974033 - 24973981
Alignment:
Q  98 catgtcataagttgtgtctataagttcttccaaacaatcttacaagtgcttat 150  Q
    ||||| ||||||| |  ||||||| ||| ||||||||||||||||||||||||    
T  24974033 catgttataagttattcctataagctctaccaaacaatcttacaagtgcttat 24973981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 166
Target Start/End: Original strand, 32917261 - 32917329
Alignment:
Q  98 catgtcataagttgtgtctataagttcttccaaacaatcttacaagtgcttatactagtaaataagctc 166  Q
    ||||||||||||||| || ||||| ||| ||||||| ||| ||||||| |||| ||||||  |||||||    
T  32917261 catgtcataagttgtttccataagctctcccaaacagtctcacaagtgtttattctagtaggtaagctc 32917329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 32172717 - 32172789
Alignment:
Q  98 catgtcataagttgtgtctataagttcttccaaacaatcttacaagtgcttatactagtaaataagctcaaat 170  Q
    ||||||||||||||| || ||||| ||| |||||| |||| |||||||||||| |||||| ||||||||||||    
T  32172717 catgtcataagttgtttccataagctctcccaaactatctcacaagtgcttatgctagtatataagctcaaat 32172789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 9202886 - 9202814
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    ||||||||||| ||||||||||||| || ||||||||||| ||||||| ||  ||||||| ||||||| ||||    
T  9202886 taagtgcttatatataagctatttctgtagcaaaagataaaataaagttaaattgttttcatataagcaataa 9202814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 36539678 - 36539750
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    ||||||||||||| ||||||||||   |  |||||||||| |||||||||| |||||||| ||||||||||||    
T  36539678 taagtgcttatgtgtaagctatttgtttatcaaaagataaaataaagtcaacctgttttcatataagctataa 36539750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 170
Target Start/End: Complemental strand, 14599372 - 14599306
Alignment:
Q  104 ataagttgtgtctataagttcttccaaacaatcttacaagtgcttatactagtaaataagctcaaat 170  Q
    ||||||||| || ||||| |||  |||||||||||||||||| |||| |||||||||||| ||||||    
T  14599372 ataagttgtttcgataagctctctcaaacaatcttacaagtgtttatgctagtaaataagttcaaat 14599306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 38831587 - 38831529
Alignment:
Q  8 ttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataa 66  Q
    |||| ||||||||||||| |||  ||||||||| |||||||||| ||||||||||||||    
T  38831587 ttatatataagctatttctgttataaaagataaaataaagtcaaactgttttcgtataa 38831529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 42569118 - 42569036
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataatatgtcttga 83  Q
    |||| ||||||| | ||||||||||  | ||||||||||| |||||||| |  ||||||||||||||||||||| ||| ||||    
T  42569118 taagcgcttatgaaaaagctatttctatagcaaaagataaaataaagtctaattgttttcgtataagctataatctgttttga 42569036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 29117038 - 29116998
Alignment:
Q  31 caaaagataagataaagtcaagctgttttcgtataagctat 71  Q
    |||||||||| |||||||||| |||||||||||||||||||    
T  29117038 caaaagataaaataaagtcaaactgttttcgtataagctat 29116998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 35135800 - 35135728
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    |||||| ||||||||||| ||||||  |  |||||||||| |||||||||| || ||||| ||||||||||||    
T  35135800 taagtgtttatgtataagatatttctataacaaaagataaaataaagtcaaactattttcatataagctataa 35135728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 133
Target Start/End: Complemental strand, 38766567 - 38766516
Alignment:
Q  82 gaaaacaacttacgggcatgtcataagttgtgtctataagttcttccaaaca 133  Q
    |||||||||||| || | ||||||||||||| || |||||||||||||||||    
T  38766567 gaaaacaacttatggacgtgtcataagttgtttccataagttcttccaaaca 38766516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 14295468 - 14295510
Alignment:
Q  31 caaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    |||||||||| |||||||||| |||||||| ||||||||||||    
T  14295468 caaaagataaaataaagtcaaactgttttcatataagctataa 14295510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 7096264 - 7096215
Alignment:
Q  2 aagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaa 51  Q
    ||||||||||||||||||||||||  |  |||||||||| ||||||||||    
T  7096264 aagtgcttatgtataagctatttctataacaaaagataaaataaagtcaa 7096215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 20982273 - 20982208
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataa 66  Q
    |||||||||||||||||||||||||  |  |||| ||||| |||||||||| | |||||| |||||    
T  20982273 taagtgcttatgtataagctatttctataacaaaggataaaataaagtcaacccgttttcatataa 20982208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 166
Target Start/End: Complemental strand, 34117570 - 34117486
Alignment:
Q  81 tgaaaacaacttacgggcatgtcataagttgtgtctataagttcttccaaacaatcttacaagtgcttatactagtaaataagctc 166  Q
    |||||||| |||| |||||||||||||||||| || ||||| || |||| ||| ||| ||||||| |||| | |||| ||||||||    
T  34117570 tgaaaacagcttatgggcatgtcataagttgtctccataagctc-tccagacagtctaacaagtgtttatgccagtagataagctc 34117486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 10272454 - 10272414
Alignment:
Q  81 tgaaaacaacttacgggcatgtcataagttgtgtctataag 121  Q
    |||||||||||||| | ||||||||||||||| ||||||||    
T  10272454 tgaaaacaacttacagacatgtcataagttgtttctataag 10272414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 12595588 - 12595524
Alignment:
Q  2 aagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataa 66  Q
    |||||||| |||||||||||||||  | ||||||||||| ||||| ||||   ||||||||||||    
T  12595588 aagtgcttgtgtataagctatttctatagcaaaagataaaataaattcaaatagttttcgtataa 12595524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 18704173 - 18704102
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    ||||| |||||||||||| ||||||  |  |||||||||| ||||||||||||| ||||  ||||||||||||    
T  18704173 taagttcttatgtataagttatttctataacaaaagataa-ataaagtcaagctatttttatataagctataa 18704102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 54325175 - 54325103
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    ||||||||| ||||||| |||||||  || |||||||||| |||||||||| |||||||| ||||||||||||    
T  54325175 taagtgcttgtgtataaactatttctattacaaaagataaaataaagtcaaactgttttcatataagctataa 54325103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 170
Target Start/End: Complemental strand, 27123376 - 27123286
Alignment:
Q  80 ttgaaaacaacttacgggcatgtcataagttgtgtctataagttcttccaaacaatcttacaagtgcttatactagtaaataagctcaaat 170  Q
    ||||||||||||||  | ||||||||||||||| || ||||| |||  |||||| ||| |||||| ||||| |||||  ||||||||||||    
T  27123376 ttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctcacaagtacttatgctagtttataagctcaaat 27123286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 170
Target Start/End: Complemental strand, 46019653 - 46019563
Alignment:
Q  80 ttgaaaacaacttacgggcatgtcataagttgtgtctataagttcttccaaacaatcttacaagtgcttatactagtaaataagctcaaat 170  Q
    ||||||||||||||    ||||||||||||| ||| |||||  |||| || ||||||| ||||||  ||||||||||| ||||||||||||    
T  46019653 ttgaaaacaacttatcaacatgtcataagttctgtttataaactctttcagacaatctcacaagtttttatactagtacataagctcaaat 46019563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 25487544 - 25487491
Alignment:
Q  117 ataagttcttccaaacaatcttacaagtgcttatactagtaaataagctcaaat 170  Q
    ||||| |||||||||||||||||||||||||||| ||| || |||| |||||||    
T  25487544 ataagctcttccaaacaatcttacaagtgcttatgctaatagataaactcaaat 25487491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 150
Target Start/End: Original strand, 21157833 - 21157884
Alignment:
Q  99 atgtcataagttgtgtctataagttcttccaaacaatcttacaagtgcttat 150  Q
    |||||||||| ||| ||| |||| ||||||||||| ||||||||||||||||    
T  21157833 atgtcataagctgtttctgtaagctcttccaaacagtcttacaagtgcttat 21157884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 12816999 - 12817045
Alignment:
Q  98 catgtcataagttgtgtctataagttcttccaaacaatcttacaagt 144  Q
    ||||||||||||||| ||| ||||||||| |||||||||| ||||||    
T  12816999 catgtcataagttgtttctctaagttctttcaaacaatctcacaagt 12817045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 19429457 - 19429404
Alignment:
Q  117 ataagttcttccaaacaatcttacaagtgcttatactagtaaataagctcaaat 170  Q
    ||||| ||| ||||||| ||| ||||||| |||||| |||||||||||||||||    
T  19429457 ataagctctcccaaacagtctcacaagtgtttataccagtaaataagctcaaat 19429404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 25717660 - 25717709
Alignment:
Q  101 gtcataagttgtgtctataagttcttccaaacaatcttacaagtgcttat 150  Q
    |||||||||||| || ||||| ||||||||||||| | ||||||||||||    
T  25717660 gtcataagttgtttccataagctcttccaaacaatttcacaagtgcttat 25717709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 30338727 - 30338658
Alignment:
Q  4 gtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    |||||||||||||| |||||||  |  |||||||||  ||||||| || |||||||| ||||||||||||    
T  30338727 gtgcttatgtataaactatttctataacaaaagatagaataaagttaaactgttttcatataagctataa 30338658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 32724053 - 32724118
Alignment:
Q  3 agtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagc 68  Q
    ||||||||||| ||| |||||||  || |||||||||| |||||||||| || ||||| |||||||    
T  32724053 agtgcttatgtctaatctatttctattacaaaagataaaataaagtcaaactattttcatataagc 32724118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 44119293 - 44119228
Alignment:
Q  8 ttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    ||||||||||| ||||||  | ||||||||||| | ||||||||  ||||||| ||||||||||||    
T  44119293 ttatgtataagttatttctatagcaaaagataaaacaaagtcaatatgttttcatataagctataa 44119228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 46797109 - 46797150
Alignment:
Q  129 aaacaatcttacaagtgcttatactagtaaataagctcaaat 170  Q
    ||||| ||| |||||||||||||| |||||||||||||||||    
T  46797109 aaacagtctcacaagtgcttatacaagtaaataagctcaaat 46797150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 4191671 - 4191731
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagat-aagataaagtcaagctgttttc 60  Q
    |||||||||||||||||||||||||  |  |||||||| || |||||||||| ||||||||    
T  4191671 taagtgcttatgtataagctatttctataacaaaagataaaaataaagtcaaactgttttc 4191731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 4663723 - 4663679
Alignment:
Q  126 tccaaacaatcttacaagtgcttatactagtaaataagctcaaat 170  Q
    |||||||||||||||||||| |||||  | |||||||||||||||    
T  4663723 tccaaacaatcttacaagtgtttatatcactaaataagctcaaat 4663679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 4798697 - 4798649
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtc 49  Q
    |||||||||||||||||||||||||  |  |||||||||| ||||||||    
T  4798697 taagtgcttatgtataagctatttctatatcaaaagataaaataaagtc 4798649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 18630612 - 18630684
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    |||| ||||||| |||| |||||||| |  |||||||||| ||||||||||   |||||| ||||||||||||    
T  18630612 taagcgcttatgcataaactatttcaataacaaaagataaaataaagtcaattggttttcatataagctataa 18630684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 21593149 - 21593078
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    ||||||||||||||||| |||||||  |  | |||||||| |||||||||| || ||||| ||||||||||||    
T  21593149 taagtgcttatgtataaactatttctataactaaagataaaataaagtcaa-ctattttcatataagctataa 21593078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 191
Target Start/End: Complemental strand, 48157143 - 48157032
Alignment:
Q  81 tgaaaacaacttacgggcatgtcataagttgtgtctataagttcttccaaacaatcttacaagtgcttatactagtaaataagctcaaattag-cttaat 179  Q
    |||||||| |||| || |||| |||||||||| |||||||| ||| ||||||| ||| |||| |||||| |  ||||||||||||||||| || ||||||    
T  48157143 tgaaaacagcttatggacatggcataagttgtttctataagctctcccaaacagtctcacaaatgcttaaatcagtaaataagctcaaataagtcttaat 48157044  T
Q  180 ataaacaagccc 191  Q
      ||||||||||    
T  48157043 ccaaacaagccc 48157032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 21453228 - 21453298
Alignment:
Q  3 agtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    |||| |||| || |||||||||| ||  |||||||||||||||||||||| |||| || ||||||||||||    
T  21453228 agtgtttatatacaagctatttctgtaacaaaagataagataaagtcaagttgttctcatataagctataa 21453298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 45593853 - 45593791
Alignment:
Q  5 tgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataag 67  Q
    ||||||||||||||||||||| ||  ||||| |||| |||||||||| |||||||| ||||||    
T  45593853 tgcttatgtataagctatttctgtaacaaaacataaaataaagtcaaactgttttcatataag 45593791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 3610878 - 3610806
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    |||||||||||||||||||||||||     |||||||||| || ||| ||| ||||||| |||||||||||||    
T  3610878 taagtgcttatgtataagctatttctacaacaaaagataaaatgaaggcaaactgttttggtataagctataa 3610806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 7244634 - 7244703
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctata 72  Q
    |||||||||||||||||||||||||  |  |||||||||| | |||||||| ||||||||  ||||||||||    
T  7244634 taagtgcttatgtataagctatttctatatcaaaagataaaagaaagtcaaactgttttc--ataagctata 7244703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 27548195 - 27548267
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    ||||||||||| |||||||||||||  | ||||||||||| |||||||| |  ||||||| | ||||||||||    
T  27548195 taagtgcttatctataagctatttccttagcaaaagataaaataaagtctaattgttttcatttaagctataa 27548267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 31002693 - 31002765
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    ||||||||||||||||| ||||||||    |||||||||| ||||||||||  | ||||| ||||||||||||    
T  31002693 taagtgcttatgtataaactatttcaaccacaaaagataaaataaagtcaaaatattttcatataagctataa 31002765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 33894555 - 33894622
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagct 69  Q
    |||||||||||||||||||||||||  |  |||||||||| || ||||||| |||||||| ||||||||    
T  33894555 taagtgcttatgtataagctatttctataacaaaagataaaat-aagtcaaactgttttcatataagct 33894622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 36537957 - 36538024
Alignment:
Q  83 aaaacaacttacgggcatgtcataagttgtgtctataagttcttccaaacaatcttacaagtgcttat 150  Q
    ||||||||||| |  ||||||||||||||| || |||||||||  |||||||||| ||||||| ||||    
T  36537957 aaaacaacttatgaacatgtcataagttgtttccataagttctctcaaacaatctcacaagtgtttat 36538024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 2825223 - 2825170
Alignment:
Q  117 ataagttcttccaaacaatcttacaagtgcttatactagtaaataagctcaaat 170  Q
    ||||||||||||||| | ||| |||||||||||||  |||| ||||||||||||    
T  2825223 ataagttcttccaaagagtctcacaagtgcttatataagtagataagctcaaat 2825170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 45813315 - 45813246
Alignment:
Q  4 gtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    |||||||| |||||||||||||  |  |||||||||| ||||||||||  ||||||| ||||| ||||||    
T  45813315 gtgcttatttataagctatttctataccaaaagataaaataaagtcaacttgttttcatataatctataa 45813246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 10079345 - 10079273
Alignment:
Q  98 catgtcataagttgtgtctataagttcttccaaacaatcttacaagtgcttatactagtaaataagctcaaat 170  Q
    |||||||| || ||| |||||||| ||| |||||||| || | ||||| |||| || ||||||||||||||||    
T  10079345 catgtcatcagctgtttctataagctctcccaaacaacctcataagtgtttatgctcgtaaataagctcaaat 10079273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 169
Target Start/End: Original strand, 24967108 - 24967196
Alignment:
Q  81 tgaaaacaacttacgggcatgtcataagttgtgtctataagttcttccaaacaatcttacaagtgcttatactagtaaataagctcaaa 169  Q
    ||||||||||||  ||  |||| ||||||||| || ||||  ||||||||||| ||| | || || ||||||||||| |||||||||||    
T  24967108 tgaaaacaacttctggatatgttataagttgtttccataatctcttccaaacagtctcataaatgtttatactagtagataagctcaaa 24967196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 28440464 - 28440516
Alignment:
Q  14 ataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataa 66  Q
    |||||||||||||||  |||||||||| ||||||||||   ||||||||||||    
T  28440464 ataagctatttcagtaacaaaagataaaataaagtcaaatggttttcgtataa 28440516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 82 - 168
Target Start/End: Complemental strand, 9878704 - 9878618
Alignment:
Q  82 gaaaacaacttacgggcatgtcataagttgtgtctataagttcttccaaacaatcttacaagtgcttatactagtaaataagctcaa 168  Q
    |||||||||||| || ||||||||||||||| || ||||| ||||||  ||| ||| | |||||||||  |||||||||||||||||    
T  9878704 gaaaacaacttatggacatgtcataagttgtttccataagctcttccctacagtctcagaagtgcttaagctagtaaataagctcaa 9878618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 150
Target Start/End: Complemental strand, 44606133 - 44606064
Alignment:
Q  81 tgaaaacaacttacgggcatgtcataagttgtgtctataagttcttccaaacaatcttacaagtgcttat 150  Q
    ||||||||||||| || ||||||||||||||| |  ||||||||||||||||| || ||||||| |||||    
T  44606133 tgaaaacaacttatggacatgtcataagttgttttcataagttcttccaaacagtcgtacaagtacttat 44606064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 25609728 - 25609800
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    |||||||||||||||||||||||||  |   ||||||||| ||||||||||  | ||||||||||||||||||    
T  25609728 taagtgcttatgtataagctatttctataagaaaagataaaataaagtcaatttattttcgtataagctataa 25609800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 170
Target Start/End: Original strand, 9996784 - 9996874
Alignment:
Q  80 ttgaaaacaacttacgggcatgtcataagttgtgtctataagttcttccaaacaatcttacaagtgcttatactagtaaataagctcaaat 170  Q
    |||| ||||| ||| ||| |||||||||||||| |||||||| ||| |||| || ||| |||||| ||||| |||||  ||||||||||||    
T  9996784 ttgagaacaatttatgggtatgtcataagttgtttctataagctctcccaagcagtctcacaagtacttatgctagttgataagctcaaat 9996874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 13630416 - 13630354
Alignment:
Q  4 gtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataa 66  Q
    ||||||||||||||| ||||||  |  ||||||||||||||||||||| |||||||| |||||    
T  13630416 gtgcttatgtataagttatttctctatcaaaagataagataaagtcaaactgttttcatataa 13630354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 170
Target Start/End: Original strand, 32821856 - 32821945
Alignment:
Q  81 tgaaaacaacttacgggcatgtcataagttgtgtctataagttcttccaaacaatcttacaagtgcttatactagtaaataagctcaaat 170  Q
    |||||||| |||| || ||||||||||||||| |||||||  ||||||||||| |||| ||| ||||||   | ||| ||||||||||||    
T  32821856 tgaaaacagcttatggacatgtcataagttgtttctataaactcttccaaacagtcttgcaaatgcttacgttggtagataagctcaaat 32821945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 2416245 - 2416317
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    |||||||||||||||||| |||||| || ||||||||||| || |||| ||  ||||||  ||||||||||||    
T  2416245 taagtgcttatgtataagttatttctgtagcaaaagataaaatgaagttaaattgttttgatataagctataa 2416317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 10143104 - 10143176
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    |||||||||||||||||| ||||||  |  |||||||||| || ||||||| |||||||  ||||||||||||    
T  10143104 taagtgcttatgtataagttatttctataacaaaagataaaattaagtcaaactgtttttatataagctataa 10143176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 18962176 - 18962104
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    ||||||||||||||| ||||||||   |  |||||||||| ||||||| || |||||||| ||||||||||||    
T  18962176 taagtgcttatgtattagctatttttataacaaaagataaaataaagttaaactgttttcatataagctataa 18962104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 34339055 - 34339123
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagct 69  Q
    ||||||||||||||||| || ||||  | || |||||||| |||||||||  |||||||||||||||||    
T  34339055 taagtgcttatgtataaactttttctatagctaaagataaaataaagtcagactgttttcgtataagct 34339123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 170
Target Start/End: Original strand, 4661321 - 4661396
Alignment:
Q  95 gggcatgtcataagttgtgtctataagttcttccaaacaatcttacaagtgcttatactagtaaataagctcaaat 170  Q
    |||||||||||||||||  || ||||||||||  ||||||||||||||| | |||||  |||| |||| |||||||    
T  4661321 gggcatgtcataagttgcttccataagttctttgaaacaatcttacaagagtttatatgagtagataaactcaaat 4661396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 168
Target Start/End: Original strand, 34927046 - 34927097
Alignment:
Q  117 ataagttcttccaaacaatcttacaagtgcttatactagtaaataagctcaa 168  Q
    ||||||||||||||||| ||||| ||||||||||   |||||||||||||||    
T  34927046 ataagttcttccaaacagtcttataagtgcttatgtcagtaaataagctcaa 34927097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 14209209 - 14209279
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctat 71  Q
    |||||| || ||| |||||||||||| |  |||||||||| ||||| |||| |||||||| ||||||||||    
T  14209209 taagtgtttctgtctaagctatttcaataacaaaagataaaataaattcaaactgttttcatataagctat 14209279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 44438963 - 44438905
Alignment:
Q  15 taagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    ||||||||||| || ||||||||||| |||||||||| ||||||| ||| |||| ||||    
T  44438963 taagctatttccgtagcaaaagataaaataaagtcaaactgtttttgtacaagccataa 44438905  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 5045295 - 5045238
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttt 58  Q
    |||||| |||||||||||||||||   |  |||||||||| |||||||||||||||||    
T  5045295 taagtgtttatgtataagctatttttataacaaaagataaaataaagtcaagctgttt 5045238  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 17952839 - 17952770
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagcta 70  Q
    |||| |||||| |||||||||||||  |  |||||||||| |||||||||| || ||||| |||||||||    
T  17952839 taagagcttatatataagctatttctataacaaaagataaaataaagtcaaactattttcatataagcta 17952770  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 28803644 - 28803575
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagcta 70  Q
    ||||||||||| |||||| ||||||  |  |||||||||| |||||||||| ||| |||| |||||||||    
T  28803644 taagtgcttatatataagttatttcgataacaaaagataaaataaagtcaaactgatttcatataagcta 28803575  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 29430695 - 29430759
Alignment:
Q  8 ttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    ||||||||||||||||||  |  |||||| ||| |||||||||| |||||||| ||||||||||||    
T  29430695 ttatgtataagctatttctataacaaaagttaa-ataaagtcaaactgttttcttataagctataa 29430759  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 35459842 - 35459911
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagcta 70  Q
    |||||| || ||||||||||||||   |  |||||||||| ||||||||||  |||||||||||||||||    
T  35459842 taagtgattttgtataagctatttgtataccaaaagataaaataaagtcaaattgttttcgtataagcta 35459911  T

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Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 41039784 - 41039739
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaa 46  Q
    ||||||||||||||||||||||||| ||  |||||||||| |||||    
T  41039784 taagtgcttatgtataagctatttctgtgacaaaagataaaataaa 41039739  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 4550709 - 4550781
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    |||||||||||||||||| | ||||  |   ||||||||| |||| |||||||||||||| ||||| ||||||    
T  4550709 taagtgcttatgtataagttgtttccataataaaagataaaataacgtcaagctgttttcatataaactataa 4550781  T

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Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 13866825 - 13866893
Alignment:
Q  5 tgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    ||||||||||||| |||||||  | ||||||||||| || ||||||| |||||||  ||||| ||||||    
T  13866825 tgcttatgtataaactatttctatagcaaaagataaaattaagtcaaactgtttttatataatctataa 13866893  T

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Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 15780141 - 15780213
Alignment:
Q  98 catgtcataagttgtgtctataagttcttccaaacaatcttacaagtgcttatactagtaaataagctcaaat 170  Q
    |||||||| | |||| ||||| || |||| |||||||||||||||| | |||| |||||  ||||||||||||    
T  15780141 catgtcattaattgtttctatgagatctttcaaacaatcttacaaggggttatgctagtcgataagctcaaat 15780213  T

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Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 30538196 - 30538156
Alignment:
Q  81 tgaaaacaacttacgggcatgtcataagttgtgtctataag 121  Q
    ||||||||||||| || ||||||||||||||| ||||||||    
T  30538196 tgaaaacaacttatggacatgtcataagttgtttctataag 30538156  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 35298616 - 35298557
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttc 60  Q
    ||||||||||||||||||||||||||||  |||||||||| |||||| ||| | ||||||    
T  35298616 taagtgcttatgtataagctatttcagtaacaaaagataaaataaagccaaacagttttc 35298557  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 3537159 - 3537098
Alignment:
Q  11 tgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctata 72  Q
    ||||||||| |||||  | ||||||||||| ||||||||||  |||||||||||||||||||    
T  3537159 tgtataagcaatttctatagcaaaagataaaataaagtcaaattgttttcgtataagctata 3537098  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 150
Target Start/End: Original strand, 4560549 - 4560618
Alignment:
Q  81 tgaaaacaacttacgggcatgtcataagttgtgtctataagttcttccaaacaatcttacaagtgcttat 150  Q
    |||||||| ||||| | ||||| ||||||| | || |||||||||||||||||| || ||||||||||||    
T  4560549 tgaaaacagcttactgacatgttataagttatttccataagttcttccaaacaacctcacaagtgcttat 4560618  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 165
Target Start/End: Original strand, 4511075 - 4511159
Alignment:
Q  81 tgaaaacaacttacgggcatgtcataagttgtgtctataagttcttccaaacaatcttacaagtgcttatactagtaaataagct 165  Q
    |||||| | |||||||||||||| |||||||| |  |||||||||| | || | ||| |||||||||||||| |||| |||||||    
T  4511075 tgaaaatagcttacgggcatgtcttaagttgttttcataagttctttcgaatagtctcacaagtgcttataccagtagataagct 4511159  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 34770824 - 34770896
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    |||||||||||||| || |||||||  || |||||||||| ||||||||||  ||||||| | ||||||||||    
T  34770824 taagtgcttatgtaaaaactatttccattacaaaagataaaataaagtcaaattgttttcatttaagctataa 34770896  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 30191147 - 30191068
Alignment:
Q  98 catgtcataagttgtgtctataagttcttccaaacaatcttacaagtgcttatactagtaaataagctcaaattagctta 177  Q
    ||||||||||||||| || ||||| ||| ||||||| ||| |||||||||||| | | || |||| ||||||| ||||||    
T  30191147 catgtcataagttgtttccataagctctcccaaacagtctaacaagtgcttatgccaatagataaactcaaataagctta 30191068  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 31884928 - 31884874
Alignment:
Q  116 tataagttcttccaaacaatcttacaagtgcttatactagtaaataagctcaaat 170  Q
    |||||||| | ||||||| ||| |||||||||||| |||||| ||||||||||||    
T  31884928 tataagttttcccaaacactctcacaagtgcttatgctagtagataagctcaaat 31884874  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 24326114 - 24326171
Alignment:
Q  117 ataagttcttccaaacaatcttacaagtgcttatactagtaaataagctcaaattagc 174  Q
    ||||| ||| ||||||| ||| |||||||||||| | |||| ||||||||||||||||    
T  24326114 ataagctctcccaaacagtctcacaagtgcttatgccagtagataagctcaaattagc 24326171  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 26215428 - 26215493
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataa 66  Q
    |||| ||||||||||||||||||||  |  |||||||||| ||||||| || || |||||||||||    
T  26215428 taagcgcttatgtataagctatttctataacaaaagataaaataaagttaaactattttcgtataa 26215493  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 31862437 - 31862502
Alignment:
Q  13 tataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataatatgt 78  Q
    |||||| ||||||| |  |||||||||| |||||||||| || || ||||||||||||||| ||||    
T  31862437 tataagttatttcaataacaaaagataatataaagtcaaactattctcgtataagctataagatgt 31862502  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 787244 - 787172
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    ||||||||||||| |||||| |||| ||  || ||||||| ||||||||||  |||| || ||||||||||||    
T  787244 taagtgcttatgtttaagctgtttccgtaacataagataaaataaagtcaaattgttatcatataagctataa 787172  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 10114422 - 10114493
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    |||||||||||||||||||||||||  | ||||||||||| ||||  | ||  |||||| |||||||||||||    
T  10114422 taagtgcttatgtataagctatttctatagcaaaagataaaataagttgaat-tgttttggtataagctataa 10114493  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 11000687 - 11000627
Alignment:
Q  13 tataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    |||||||||||||  |  |||||||||| ||||||||||  |||||||| |||||||||||    
T  11000687 tataagctatttccataacaaaagataaaataaagtcaaattgttttcgaataagctataa 11000627  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 25872544 - 25872472
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    |||||||||| |||||||||||||   || |||||||| | ||||||| || |||||||| |||||| |||||    
T  25872544 taagtgcttacgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataa 25872472  T

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Target: scaffold0590 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 1212 - 1140
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    |||||||||||||||||||||||||  |  |||||||||| |||||||||| || || || ||||||| ||||    
T  1212 taagtgcttatgtataagctatttctataacaaaagataaaataaagtcaaactattctcatataagccataa 1140  T

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Target: scaffold0275 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 2763 - 2835
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    |||||||||||||||||||||||||  |  |||||||||| |||||||||| || || || ||||||| ||||    
T  2763 taagtgcttatgtataagctatttctataacaaaagataaaataaagtcaaactattctcatataagccataa 2835  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 27508 - 27580
Alignment:
Q  1 taagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcgtataagctataa 73  Q
    |||||||||||||||||| ||||||  |  || ||||||| ||||||||||  ||||||| ||||| ||||||    
T  27508 taagtgcttatgtataagttatttctataacagaagataaaataaagtcaaattgttttcatataaactataa 27580  T

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