View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15581_low_8 (Length: 321)
Name: NF15581_low_8
Description: NF15581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15581_low_8 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0734 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 13 - 321
Target Start/End: Original strand, 32097543 - 32097851
Alignment:
| Q |
13 |
aatatatacaagaaacatttatgggaagtttcatgatgagtttataaagattattcaatttaggaaggaaaaacttgaaaaagaagggtctccgtataga |
112 |
Q |
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| T |
32097543 |
aatatatacaagaaacatttttgggaagttttatgatgagtttataaagattattcaatttaggaaggaaaaacttgaaaaagaagggtctccgtataga |
32097642 |
T |
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| Q |
113 |
tataaggtatctaatgattatgactcgaaagacacattcatagtttgtgtggatctggagacaaaggttgctacttgtgactgccagctcagaacatcgc |
212 |
Q |
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| T |
32097643 |
tataaggtatctaatgattatgactcgaaagacacattcatagtttgtgtggatctggagacaaaggttgctaattgtgactgccagctcagaacatcgc |
32097742 |
T |
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| Q |
213 |
tctatcaaaatgcgaaagtaggtcgatgacgatggcaccacaattatcaatgacgatggcggcgcgatgacggtggttgagagacgaagatggtgatgca |
312 |
Q |
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| T |
32097743 |
tctatcaaaatacgaaagtagatcgatgacgatggcaccacaattatcaatgacgatggcggcgcgatgacggtggttgagagacgaagatggtgatgca |
32097842 |
T |
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| Q |
313 |
aaacgctct |
321 |
Q |
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||||||||| |
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| T |
32097843 |
aaacgctct |
32097851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0734 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: scaffold0734
Description:
Target: scaffold0734; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 436 - 624
Alignment:
| Q |
13 |
aatatatacaagaaacatttatgggaagtttcatgatgagtttataaagattattcaatttaggaaggaaaaacttgaaaaagaagggtctccgtataga |
112 |
Q |
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|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||| | |
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| T |
436 |
aatatatacaagaaacatttttgggaagtttcacgatgagtttataaagattattcaatttaggagggaaaaacttgaaaaataagggtctcagtataaa |
535 |
T |
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| Q |
113 |
tataaggtatctaatgattatgactcgaaagacacattcatagtttgtgtggatctggagacaaaggttgctacttgtgactgccagct |
201 |
Q |
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| T |
536 |
tataaggtatctaatgattatgactcgaaagacacattcatagtttgtgtgaatctggagacaaaggttgctacttgtgactgtcagct |
624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 198 - 321
Target Start/End: Original strand, 3028826 - 3028949
Alignment:
| Q |
198 |
agctcagaacatcgctctatcaaaatgcgaaagtaggtcgatgacgatggcaccacaattatcaatgacgatggcggcgcgatgacggtggttgagagac |
297 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||| |||||||| |
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| T |
3028826 |
agctcagaacatcgctctatcaaaatacgaaagtaggtcgatgacgatggcaccgcaattatcgacgacgatggcggcgcgatgacggtggctgagagac |
3028925 |
T |
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| Q |
298 |
gaagatggtgatgcaaaacgctct |
321 |
Q |
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| T |
3028926 |
gaagatggtgatgcaaaatgctct |
3028949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 321
Target Start/End: Original strand, 6110966 - 6111061
Alignment:
| Q |
226 |
gaaagtaggtcgatgacgatggcaccacaattatcaatgacgatggcggcgcgatgacggtggttgagagacgaagatggtgatgcaaaacgctct |
321 |
Q |
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|||||| ||||||||||||||||| || || ||| |||| | |||| | ||||||||||||||| || ||||||||||||||| ||||||||| |
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| T |
6110966 |
gaaagtgggtcgatgacgatggcaacatgatgatcgatgaaggcggcgacaagatgacggtggttgaaagtcgaagatggtgatgcgaaacgctct |
6111061 |
T |
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