View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15581_low_9 (Length: 277)
Name: NF15581_low_9
Description: NF15581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15581_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 266
Target Start/End: Original strand, 4196872 - 4197123
Alignment:
| Q |
19 |
tagatatcctgtttctagacagaaaacagacaacgcttgtataattggaacttatatgatgtgggaaactaagannnnnnnnnctt----ctattgaaat |
114 |
Q |
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| T |
4196872 |
tagatatcctgtttctagacagaaaacagacaacgcttgtataattggaacttatatgatgtgggaaactaagattttttttttttttttctattgaaat |
4196971 |
T |
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| Q |
115 |
ctactaaagaaatttcacatcttttctacagtttaagttgtctcgtgaactaaaaagtaaaatggggttggttacacttcaaagggtggaaacagtttac |
214 |
Q |
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| T |
4196972 |
ctactaaagaaatttcacatcttttctaccgtttaagttgtctcgtgaactaaaaagtaaaatggggttggttacacttcaaagggtggaaacagtttac |
4197071 |
T |
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| Q |
215 |
atttacacttactgattttttaatgcttcaccttttggtgatctgtatctgt |
266 |
Q |
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| T |
4197072 |
atttacacttactgattttttaatgcttcaccttttggtgatctgtatctgt |
4197123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 143
Target Start/End: Original strand, 4188218 - 4188253
Alignment:
| Q |
108 |
ttgaaatctactaaagaaatttcacatcttttctac |
143 |
Q |
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| T |
4188218 |
ttgaaatctactaaagaaaattcacatcttttctac |
4188253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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