View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15582_low_3 (Length: 245)

Name: NF15582_low_3
Description: NF15582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15582_low_3
NF15582_low_3
[»] chr7 (2 HSPs)
chr7 (8-231)||(17907268-17907491)
chr7 (52-115)||(26378218-26378281)
[»] chr5 (1 HSPs)
chr5 (53-138)||(35177869-35177954)
[»] chr3 (6 HSPs)
chr3 (46-117)||(47954065-47954136)
chr3 (146-182)||(41514848-41514884)
chr3 (67-139)||(47652475-47652547)
chr3 (12-138)||(47681539-47681665)
chr3 (146-199)||(47681465-47681518)
chr3 (88-128)||(54256872-54256912)
[»] chr1 (1 HSPs)
chr1 (86-136)||(4931940-4931990)


Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 231
Target Start/End: Original strand, 17907268 - 17907491
Alignment:
Q  8 gagatgaagtatgaagttaaaagagaagatcgaaagcaagagatggtttagtgatgagcggttacctacgccgtggcatttaggggttatataagatccc 107  Q
    ||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17907268 gagatgaagtatgaagtgaaaagagaagatggagagcaagagatggtttagtgatgagcggttacctacgccgtggcatttaggggttatataagatccc 17907367  T
Q  108 atctcatcactgattcagcataattttatttcaatacatcatgtgtagttcacatgatatttttaatgttatcattaggcgaaaaaccataagagacaga 207  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17907368 atctcatcaccgattcagcataattttatttcaatacatcatgtgtagttcacatgatatttttaatgttatcattaggcgaaaaaccataagagacaga 17907467  T
Q  208 cacttcctctatataagcaaaaac 231  Q
    ||||||||||||||||||||||||    
T  17907468 cacttcctctatataagcaaaaac 17907491  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 26378218 - 26378281
Alignment:
Q  52 ggtttagtgatgagcggttacctacgccgtggcatttaggggttatataagatcccatctcatc 115  Q
    ||||||||||||||  |||||||| | | |||  |||||||||||||||||| |||||||||||    
T  26378218 ggtttagtgatgagaagttacctaggtcatggggtttaggggttatataagaccccatctcatc 26378281  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 138
Target Start/End: Original strand, 35177869 - 35177954
Alignment:
Q  53 gtttagtgatgagcggttacctacgccgtggcatttaggggttatataagatcccatctcatcactgattcagcataattttattt 138  Q
    ||||||||||||| | ||||||| | ||| |  |||||| ||||||||||| ||||||||||||| || ||||||| |||||||||    
T  35177869 gtttagtgatgagagtttacctaggtcgtaggttttaggagttatataagaccccatctcatcaccgactcagcattattttattt 35177954  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 117
Target Start/End: Original strand, 47954065 - 47954136
Alignment:
Q  46 agagatggtttagtgatgagcggttacctacgccgtggcatttaggggttatataagatcccatctcatcac 117  Q
    |||| ||||||||||||||| ||||||||| | |||||  ||||||||||||||| || | |||||||||||    
T  47954065 agaggtggtttagtgatgagaggttacctaggtcgtggggtttaggggttatatatgacctcatctcatcac 47954136  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 41514848 - 41514884
Alignment:
Q  146 tcatgtgtagttcacatgatatttttaatgttatcat 182  Q
    ||||||| |||||||||||||||||||||||||||||    
T  41514848 tcatgtgcagttcacatgatatttttaatgttatcat 41514884  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 139
Target Start/End: Original strand, 47652475 - 47652547
Alignment:
Q  67 ggttacctacgccgtggcatttaggggttatataagatcccatctcatcactgattcagcataattttatttc 139  Q
    ||||||||| | |||||  |||||||||||||||||| |||||||||||||  | ||| ||| ||||||||||    
T  47652475 ggttacctaggtcgtggggtttaggggttatataagaccccatctcatcaccaactcaacattattttatttc 47652547  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 138
Target Start/End: Complemental strand, 47681665 - 47681539
Alignment:
Q  12 tgaagtatgaagttaaaagagaagatcgaaagcaagagatggtttagtgatgagcggttacctacgccgtggcatttaggggttatataagatcccatct 111  Q
    ||||||||||||| ||  |||||||| || ||  ||||  ||||||||||| || | | ||||| | |||||  |||||||||||||||||| || ||||    
T  47681665 tgaagtatgaagtgaagtgagaagatggagaggcagaggcggtttagtgatcagagatgacctaggtcgtggggtttaggggttatataagaccctatct 47681566  T
Q  112 catcactgattcagcataattttattt 138  Q
    ||| ||  | ||||||| |||||||||    
T  47681565 cattaccaactcagcattattttattt 47681539  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 47681518 - 47681465
Alignment:
Q  146 tcatgtgtagttcacatgatatttttaatgttatcattaggcgaaaaaccataa 199  Q
    ||||||| | ||||||||||||||||| |||||||||||||  ||||| |||||    
T  47681518 tcatgtgcaattcacatgatatttttagtgttatcattagggaaaaaagcataa 47681465  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 54256872 - 54256912
Alignment:
Q  88 taggggttatataagatcccatctcatcactgattcagcat 128  Q
    ||||||||||||| || ||||||||||||| ||||||||||    
T  54256872 taggggttatatacgaccccatctcatcaccgattcagcat 54256912  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 136
Target Start/End: Original strand, 4931940 - 4931990
Alignment:
Q  86 tttaggggttatataagatcccatctcatcactgattcagcataattttat 136  Q
    |||||||||||||||||| || |||||||||| || ||||||| |||||||    
T  4931940 tttaggggttatataagacccaatctcatcaccgactcagcattattttat 4931990  T

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