View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15582_low_4 (Length: 240)
Name: NF15582_low_4
Description: NF15582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15582_low_4 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 27040055 - 27040277
Alignment:
| Q |
18 |
taaaccgtccttttaaacaagatttaatggattgggatatttaatacaccacctcgtgcattaattgcctataattgaatagataaaagatagtgataag |
117 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27040055 |
taaaccgtccttttaaacaagattcaatggattgggatatttaatacaccacctcgtgcattaattgcttataattgaatagataaaagatagtgataag |
27040154 |
T |
|
| Q |
118 |
ctagttagctgtcttagcgttttatatgatacatacatccacttttcatgtgtttgagcacatagtatgagttgccattattgatatgcttataatcgcc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27040155 |
ctagttagctgtcttagcgttttatatgatacatacatccacttttcatgtgtttgagcacatagtatgagttgccattattgatatgcttataatcgcc |
27040254 |
T |
|
| Q |
218 |
agccaaacaagaataaaaaattc |
240 |
Q |
| |
|
|||||||||||||||||| |||| |
|
|
| T |
27040255 |
agccaaacaagaataaaatattc |
27040277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 240
Target Start/End: Original strand, 27037413 - 27037502
Alignment:
| Q |
150 |
atacatccacttttcatgtgt--ttgagcacatagtatgagttgccattattgatatgcttataatcgccagccaaacaagaataaaaaattc |
240 |
Q |
| |
|
||||||| ||||||||||||| ||||||||| | ||||||||||| || || |||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
27037413 |
atacatctacttttcatgtgtgtttgagcacaca-tatgagttgccgttttt--tatgcttataatagccagccaaacaagaatataaaattc |
27037502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University