View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15583_low_1 (Length: 461)
Name: NF15583_low_1
Description: NF15583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15583_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 27 - 458
Target Start/End: Complemental strand, 53782331 - 53781906
Alignment:
| Q |
27 |
agcctggtccaatccaagtgggctgtggtcaaagatacattactatacaagcaacacacaagaataatataatccacatgattaattaagattggatgaa |
126 |
Q |
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| T |
53782331 |
agcctggtccaatccaagtggggtgtggtcaaagatacattactatacaagcaacacacaagaataatataatccacatgattaattaagattggatgaa |
53782232 |
T |
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| Q |
127 |
ttaatagaatagaaaggcacatgtcatataatataatccacattcacgtctttatgttatactatatatataaccaaatatgctaagtgctaacataaac |
226 |
Q |
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| T |
53782231 |
ttaatagaatagaaaggcacatgtcatatgata------acattcacgtctttatgttatactatatatataaccaaatatgctaagtgctaacataaac |
53782138 |
T |
|
| Q |
227 |
actaactcatgaattttaacttcaaaaaagaagattgagacacaaagccaaaactttggcaaattaacattatggaggaagtggcggaaatagtgaaaaa |
326 |
Q |
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| T |
53782137 |
actaactcatgaattttaacttcaaaaaagaagattgagacacaaagccaaaactttggcaaattaacattatggaggaagtggcggaaatagtgaaaaa |
53782038 |
T |
|
| Q |
327 |
acagagttctctggcaatctcaactcctccagttcaagttcaagttaatcatcaaatacattctccaaattcaataagctttacaaaaagcccttataat |
426 |
Q |
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| T |
53782037 |
acagagttctctggcaatctcaactcctccagttcaagttcaagttaatcatcaaatacattctccaaattcaataagctttccaaaaagcccttataat |
53781938 |
T |
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| Q |
427 |
tctcgttttatgaacactccctttgctactcc |
458 |
Q |
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| T |
53781937 |
tctcgttttatgaacactcccttagctactcc |
53781906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 4e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 27 - 326
Target Start/End: Complemental strand, 2094284 - 2093996
Alignment:
| Q |
27 |
agcctggtccaatccaagtgggctgtggtcaaagata--cattactatacaagcaaca----cacaagaataatataatccacatgattaattaaga--- |
117 |
Q |
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| T |
2094284 |
agcctggtccaatccaagtggggtgtgatcaaaaatatacattactatacaagcaacaacaacccaagaataatataatccacatgattaattaataata |
2094185 |
T |
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| Q |
118 |
-ttggatgaattaatagaatagaaaggcacatgtcatataatataatccacattcacgtctttatgttatactatatatataaccaaatatgctaagtgc |
216 |
Q |
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|| ||||||||||| |||||||||||||| || |||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
2094184 |
attagatgaattaatggaatagaaaggcacctg----------------acattcacgtgtttatgttata-----tatataaccaaatatgctaagtgc |
2094106 |
T |
|
| Q |
217 |
taacataaacactaactcatgaattttaacttcaaaaaagaagattgagacacaaagccaaaactttggcaaattaacattatggaggaagtggcggaaa |
316 |
Q |
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| T |
2094105 |
taacataaactccaactcatgaattttaacttcaaaaaagaagattgagacacaaagccaaaactttggcaaattagcattatggaggaagtggtggaaa |
2094006 |
T |
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