View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15583_low_2 (Length: 334)
Name: NF15583_low_2
Description: NF15583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15583_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 123; Significance: 4e-63; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 179 - 329
Target Start/End: Original strand, 2116640 - 2116790
Alignment:
| Q |
179 |
tagaccaatctgtcaaagtttattccatacgaaaatttattacaaatatcacaattcacaacatacaaattcaatataaccgtttataaatctgaacata |
278 |
Q |
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| T |
2116640 |
tagaccaatctgtcaaagtttattccatatgaaaatttattacaaatatcacaattcacaacattcaaattcaatataagcgtttttaaatctgaacata |
2116739 |
T |
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| Q |
279 |
atttaatcaaatttgacaaaagatctcccaactatattacagcagatttca |
329 |
Q |
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| T |
2116740 |
atttaatcaaatttgacaaatgatctcccatctatattacagaagatttca |
2116790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 169 - 327
Target Start/End: Original strand, 2075661 - 2075813
Alignment:
| Q |
169 |
aagtaatgcctagaccaatctgtcaaagtttattccatacgaaaatttattacaaatatcacaattcacaacatacaaattcaatataaccgtttataaa |
268 |
Q |
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| T |
2075661 |
aagtaatgcctgaacaaatctatcaaagtttatttcataagaaaatttatta------tcacaattcacaacatacaaattcaatataagtgtttttaaa |
2075754 |
T |
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| Q |
269 |
tctgaacataatttaatcaaatttgacaaaagatctcccaactatattacagcagattt |
327 |
Q |
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| T |
2075755 |
tctgaacataatttaatcaaatttgacaaaagatctcccatctatattacagaagattt |
2075813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 169 - 327
Target Start/End: Original strand, 2101296 - 2101448
Alignment:
| Q |
169 |
aagtaatgcctagaccaatctgtcaaagtttattccatacgaaaatttattacaaatatcacaattcacaacatacaaattcaatataaccgtttataaa |
268 |
Q |
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| T |
2101296 |
aagtaatgcctgaacaaatctatcaaagtttatttcataagaaaatttatta------tcacaattcacaacatacaaattcaatataagtgtttttaaa |
2101389 |
T |
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| Q |
269 |
tctgaacataatttaatcaaatttgacaaaagatctcccaactatattacagcagattt |
327 |
Q |
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| T |
2101390 |
tctgaacataatttaatcaaatttgacaaaagatctcccatctatattacagaagattt |
2101448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 185 - 327
Target Start/End: Original strand, 2140843 - 2140979
Alignment:
| Q |
185 |
aatctgtcaaagtttattccatacgaaaatttattacaaatatcacaattcacaacatacaaattcaatataaccgtttataaatctgaacataatttaa |
284 |
Q |
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||||| |||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||| |
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| T |
2140843 |
aatctatcaaagtttatttcataagaaaatttatta------tcacaattcacaacatacaaattcaatataagtgtttttaaatctgaacataacttaa |
2140936 |
T |
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| Q |
285 |
tcaaatttgacaaaagatctcccaactatattacagcagattt |
327 |
Q |
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| T |
2140937 |
tcaaatttgacaaaagatctcccatctatattacagaagattt |
2140979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 2116330 - 2116370
Alignment:
| Q |
89 |
tttagggagtgtttgcctcccatttgggggaggattggtct |
129 |
Q |
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| T |
2116330 |
tttagggagagttttcctcccatttgggggaggattagtct |
2116370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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