View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15583_low_7 (Length: 290)
Name: NF15583_low_7
Description: NF15583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15583_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 4 - 272
Target Start/End: Complemental strand, 35516472 - 35516206
Alignment:
| Q |
4 |
tgagatcgatatcagacaatgactaatgtcttgattgcgtgattggaagaaattgatgtcttcttatacatgagattttaatgtgacacaataatcgtgt |
103 |
Q |
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| T |
35516472 |
tgagatcgatatcagacaatgactaatgtcttgattgcgtaattggaagaaattgatgtcttcttatacatgagattttaatttgacacaataatcgtgt |
35516373 |
T |
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| Q |
104 |
catgcagttactcgtgtaagccgtctagctttcaatcgaccaaggggaaacctgagtaacctcaaaatcccacatctttttatttaaattaactataatt |
203 |
Q |
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|| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35516372 |
cacgcagttactcgtgtaagccgtctaactttcaatcgactaaggggaaacctgagtaacctcaaaatcccacatctttttatttaaattaactataatt |
35516273 |
T |
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| Q |
204 |
agttttaggggtataccaatacactccttcaatgtgttatcgattggtatctgactgaagagacgatgc |
272 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35516272 |
agttttaggggtataccaat--actccttcaatgtgttatcgattggtatctgactgaagagatgatgc |
35516206 |
T |
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