View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15584_high_16 (Length: 332)
Name: NF15584_high_16
Description: NF15584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15584_high_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 31028117 - 31028453
Alignment:
| Q |
1 |
ataatcctataatcaaatgcttggttgaggagcttttccgtataatagcaaaactatttc----------tcgtaattttcttattctttgagagtaaat |
90 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
31028117 |
ataatcctataatcaaatgcttggttgaggagctttttcgtataatagcaaaactatttctctcgttttctcgtaattttgttattctttgagagtaaat |
31028216 |
T |
|
| Q |
91 |
gggaacataacaatatcatatcatcataaaatcaatacaatggcatcactatgtatgaactcaacagtaccactctcaccatcttctcatcctcggaaca |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31028217 |
gggaacataacaatatcatatcatcataaaatcaatacaatggcatcactatgtatgaactccacagtaccactctcaccatcttctcatcctcgtaaca |
31028316 |
T |
|
| Q |
191 |
acacaactctttcttcttcttcttccctgcttgttgataacaacaacaatattcatagtaatagccttaaaacaacatcaactaatttgaaacctattgt |
290 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
31028317 |
acaccactctttcttcttcttcttctttgcttgttgataacaacaacaatattcatagtaatagccttaaaacaacatcaagtaatttgaaacctattgt |
31028416 |
T |
|
| Q |
291 |
tgttattggtcaccctcctacttttgtctctgctcct |
327 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31028417 |
tgttattggtcaccctcctacttttgtttctgctcct |
31028453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University