View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15584_high_18 (Length: 331)
Name: NF15584_high_18
Description: NF15584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15584_high_18 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 21 - 330
Target Start/End: Original strand, 54646404 - 54646713
Alignment:
| Q |
21 |
accaaaatactagtaggataaaccaccagtttagtccttaaagtatcattgtttctccaatttagcctaagtatttaaaatccatcaggttagtccctac |
120 |
Q |
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| T |
54646404 |
accaaaatactagtaggataaaccaccagtttagtccttaaagtatcattgtttctccaatttagcctaagtatttaaaatccatcaggttagtccctac |
54646503 |
T |
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| Q |
121 |
tattaagatcttatgctaaattgattgattttcatatactctttcgactaaattgacgtatttcatatattttaggactacttattatttttatatactt |
220 |
Q |
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| T |
54646504 |
tattaagatcttatgctaaattgattgattttcatatactctttcgactaaattgacgtatttcatatattttaggactacttattatttttatatactt |
54646603 |
T |
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| Q |
221 |
tgggaactaaattgatggtttattcgttacgactatatcatgataaccacttaccgcgggtgttgcagctcgtttggtgagaggatatagatgtgtctct |
320 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
54646604 |
tgggaactaaattgatggtttatttgttacgactatatcatgataaccacttaccgcgggtgttgcagctcgtttggtgagaggatatagatgtgtccct |
54646703 |
T |
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| Q |
321 |
gctcctcctc |
330 |
Q |
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| T |
54646704 |
ggtcctcctc |
54646713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 2055558 - 2055473
Alignment:
| Q |
149 |
ttttcatatactctttcgactaaattgacgtatttcatatattttagga-ctacttattatttttatatactttgggaactaaatt |
233 |
Q |
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| T |
2055558 |
ttttcatatactttagagactaaattgaccgatttcatatactttaggaactacttattatttatatatagtttagggactaaatt |
2055473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 235
Target Start/End: Complemental strand, 113440 - 113374
Alignment:
| Q |
169 |
taaattgacgtatttcatatattttaggactacttattatttttatatactttgggaactaaattga |
235 |
Q |
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| T |
113440 |
taaattgacatatttcatacttttaaggattacttattatttttatatactttctggactaaattga |
113374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 26004450 - 26004492
Alignment:
| Q |
204 |
attatttttatatactttgggaactaaattgatggtttattcg |
246 |
Q |
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| T |
26004450 |
attatttttatatactttagggactaaattgatggtttattcg |
26004492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 189
Target Start/End: Complemental strand, 44249360 - 44249259
Alignment:
| Q |
89 |
aagtatttaaaatccatcaggttagtccctactattaagatctta--tgctaaattgattgattttcatatactctttcgactaaattgacgtatttcat |
186 |
Q |
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| T |
44249360 |
aagtacttaatatccatcaatttaatccctcctattaagatgttacatactaaattgatagattttcatatatt-ttgggactaaattgacgaatttcat |
44249262 |
T |
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| Q |
187 |
ata |
189 |
Q |
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||| |
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| T |
44249261 |
ata |
44249259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 213
Target Start/End: Original strand, 12766676 - 12766752
Alignment:
| Q |
137 |
taaattgattgattttcatatactctttcgactaaattgacgtatttcatat-attttaggactacttattattttta |
213 |
Q |
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| T |
12766676 |
taaattgatggattttcatatactttataaactaaattga-gtatttcatatgatttaaggactacttattatattta |
12766752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 245
Target Start/End: Original strand, 39142447 - 39142524
Alignment:
| Q |
169 |
taaattgacgtatttcatatattttagg-actacttattatttttatatactttgggaactaaattgatggtttattc |
245 |
Q |
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| T |
39142447 |
taaattgacggatttcatatgctttagggactactacttatatttatagattttagggactaaattgatggtttattc |
39142524 |
T |
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