View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15584_high_1_N (Length: 490)
Name: NF15584_high_1_N
Description: NF15584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15584_high_1_N |
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Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 22 - 463
Target Start/End: Complemental strand, 43940168 - 43939725
Alignment:
| Q |
22 |
catcatcatctaagaaaacaactttgtgagttaccacactttccttttccaccttcttatcctcactatgtacccaaaaaacagttcatagaatatttag |
121 |
Q |
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| T |
43940168 |
catcttcatctaagaaaacaactttgtgagttaccacactttccttttccaccttcttatcctcactatgtacccaaaaaacagttcatagaatatttag |
43940069 |
T |
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| Q |
122 |
gtaactatgtcaacaacttcaacatcaaccctatatacaacagagctgttgagttagcagagtatgttgatgatgatgagaagaaatggagggttaaagc |
221 |
Q |
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| T |
43940068 |
gtaactatgtcaacaacttcaacatcaaccctatatacaacagagctgttgagttagcagagtatgttgatgatgatgagaagaaatggagggttaaagc |
43939969 |
T |
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| Q |
222 |
tgagaataagagttctggtgaagttgaggagtattctgcaaggttcttggttgttgctagtggtgaaacagctgaacctcgtgtacctgtggttgaaggg |
321 |
Q |
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| T |
43939968 |
tgagaataagagttctggtgaagttgaggagtattctgcaaggttcttggttgttgctagtggtgaaacagctgaacctcgtgtacctgtggttgaaggg |
43939869 |
T |
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| Q |
322 |
ttggagaa--gcaaagggaaagtaattcattcaactaggtacaaaaatggaaaagagtttaaagatgaacatgttcttgttgttggttctggtaattctg |
419 |
Q |
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| T |
43939868 |
ttggagaatttcaaagggaaagtaattcattcaactaggtacaaaaatggaaaagagtttaaagatgaacatgttcttgttgttggttctggtaattctg |
43939769 |
T |
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| Q |
420 |
gtatggagattgctttagatttggctaattttggtgctaaacct |
463 |
Q |
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| T |
43939768 |
gtatggagattgctttagatttggctaattttggtgctaaacct |
43939725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 335 - 432
Target Start/End: Complemental strand, 43927944 - 43927847
Alignment:
| Q |
335 |
gggaaagtaattcattcaactaggtacaaaaatggaaaagagtttaaagatgaacatgttcttgttgttggttctggtaattctggtatggagattgc |
432 |
Q |
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| T |
43927944 |
gggaaagtgattcattcaactgggtttaagaatgggaaagagtttaaagatgaacatgttcttgttgttgggtctgggaattctggtatggaaattgc |
43927847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 225 - 435
Target Start/End: Original strand, 15608069 - 15608285
Alignment:
| Q |
225 |
gaataagagttctggtgaagttgaggagtattctgcaaggttcttggttgttgctagtggtgaaacagctgaacctcgtgtacctgtggttgaagggttg |
324 |
Q |
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||||||| |||||||||||||||||| ||| || |||||| ||||| | |||||||| ||||| ||||||| | | |||| ||||||||| | |
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| T |
15608069 |
gaataaggattctggtgaagttgaggaatatgatggaaggtttttggtaatggctagtggcgaaactagtgaaccttttctgcctgaaattgaagggtag |
15608168 |
T |
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| Q |
325 |
--gagaagcaaagggaaagtaattcattcaactaggtacaaaaatggaaaagagtttaaagatgaa----catgttcttgttgttggttctggtaattct |
418 |
Q |
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|||| |||| ||| |||| |||||||||||| ||| || |||| |||||||||||||||||| ||||||||| ||||||| ||||| |||||| |
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| T |
15608169 |
aagagatgcaatggggaagtgattcattcaactgggtttaagaatgagaaagagtttaaagatgaattaacatgttctttttgttggatctgggaattct |
15608268 |
T |
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| Q |
419 |
ggtatggagattgcttt |
435 |
Q |
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| T |
15608269 |
ggcatggaaactgcttt |
15608285 |
T |
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