View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15584_high_6 (Length: 353)
Name: NF15584_high_6
Description: NF15584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15584_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 23 - 332
Target Start/End: Original strand, 34444158 - 34444470
Alignment:
| Q |
23 |
atcatcagataagaaaagctgaaatggaaatgaagaaaatggaggtactattgtgattcttttagcaacatacatttttaagaaaatcacattctccaca |
122 |
Q |
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| T |
34444158 |
atcatcagataagaaaagctgaaatggaaatgaagaaaatggaggtactattgtgattcttttagcaacatacatttttaagaaaatcacattctcaaaa |
34444257 |
T |
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| Q |
123 |
gtttggattcacaattacttcagcgtaatcagagtgt--cactctaattttgataaaaattacactttaaaacttcaacaaaattatggagtgaccgtga |
220 |
Q |
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| T |
34444258 |
gtttggattcacaattagttcagcgtaatcagagtgtgtcactctaattttgataaaaattacactttaaaacttcaacaaaattatggagtgaccatga |
34444357 |
T |
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| Q |
221 |
tttcttccaaacatccatgtggtagcttttgtgttggcattgtggtgcaattgtttcccttcaattattgct-aatgataccaaccttttctaaggcatc |
319 |
Q |
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| T |
34444358 |
tttcttccaaacatccatgtggtagcttttgtgttggcattgtggtgcaattgtttcccttcaattattgctaaatgataccaaccttttctaaggcatt |
34444457 |
T |
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| Q |
320 |
tcatttgatgatg |
332 |
Q |
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| T |
34444458 |
tcatttgatgatg |
34444470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 6019646 - 6019598
Alignment:
| Q |
156 |
gtgtcactctaattttgataaaaattacactttaaaacttcaacaaaat |
204 |
Q |
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| T |
6019646 |
gtgtcaccataattttgacaaaaactacactttataacttcaacaaaat |
6019598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 5084055 - 5084094
Alignment:
| Q |
165 |
taattttgataaaaattacactttaaaacttcaacaaaat |
204 |
Q |
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| T |
5084055 |
taattttgataaaatttacactttaaaatttcaacaaaat |
5084094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 16067576 - 16067532
Alignment:
| Q |
160 |
cactctaattttgataaaaattacactttaaaacttcaacaaaat |
204 |
Q |
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|||| ||||||||||||||| ||||||||||| | |||||||||| |
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| T |
16067576 |
cactgtaattttgataaaaactacactttaaagcatcaacaaaat |
16067532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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